Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Shewanella sp W3-18-1

Properties
Regulator type: Transcription factor
TF locus tag: Sputw3181_0135
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Shewanellaceae
Statistics of regulated genes:
- Genes 16
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 192 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -72
Score: 5.8
Sequence: TACTGTATATAAAATCAGTA
Position: -50
Score: 5.6
Sequence: TACTGTTTATCAATACAGTG
Locus tag: Sputw3181_1241
Name: recN
Funciton: DNA repair protein RecN
recN
DNA repair protein RecN

Position: -43
Score: 5.4
Sequence: CACTGTTATTATGTACAGCA
Locus tag: Sputw3181_2587
Name: dinG
Funciton: ATP-dependent helicase DinG/Rad3
Locus tag: Sputw3181_2588
Name: SO1818
Funciton: protein of unknown function DUF81
Locus tag: Sputw3181_2589
Name: SO1817
Funciton: Primosomal replication protein N prime-like protein
dinG
ATP-dependent helicase DinG/Rad3
SO1818
protein of unknown function DUF81
SO1817
Primosomal replication protein N prime-like protein

Position: -129
Score: 5.6
Sequence: TACTGTATGATTGTACAGTA
Locus tag: Sputw3181_1265
Name: recA
Funciton: Recombinase A
Locus tag: Sputw3181_1266
Name: recX
Funciton: Regulatory protein RecX
recA
Recombinase A
recX
Regulatory protein RecX

Position: -45
Score: 5.9
Sequence: TACTGTATATACTAACAGTA
Position: -26
Score: 5
Sequence: AACTGTATAGAAAAACAGGA
Locus tag: Sputw3181_0135
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
Locus tag: Sputw3181_0134
Name: sulA
Funciton: Cell division inhibitor sulA
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
sulA
Cell division inhibitor sulA

Position: -32
Score: 5.6
Sequence: TACTGTAATTATATCCAGTG
Locus tag: Sputw3181_1573
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB
DNA topoisomerase III (EC 5.99.1.2)

Position: -30
Score: 6
Sequence: TACTGTATATAAAAACAGTG
Locus tag: Sputw3181_1804
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
Locus tag: Sputw3181_1805
Name: yebR
Funciton: COG1956, GAF domain-containing protein
yebG
SOS regulon DNA damage-inducible protein
yebR
COG1956, GAF domain-containing protein

Position: -43
Score: 5.7
Sequence: TACTGGTTTTATATACAGTA
Locus tag: Sputw3181_3225
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
dinB
DNA polymerase IV (EC 2.7.7.7)

Position: -21
Score: 4.3
Sequence: ATATGTATAAATTCACAGTG
Locus tag: Sputw3181_0304
Name: recG
Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
recG
ATP-dependent DNA helicase RecG (EC 3.6.1.-)

Position: -63
Score: 5.3
Sequence: TACTGTTTAAAAACACAGTG
Locus tag: Sputw3181_2904
Name: ogr
Funciton: phage transcriptional activator, Ogr/delta
ogr
phage transcriptional activator, Ogr/delta

Position: -46
Score: 5.9
Sequence: TACTGTATAAACAAACAGTA
Locus tag: Sputw3181_1083
Name: umuD
Funciton: DNA polymerase V, subunit UmuD
Locus tag: Sputw3181_1082
Name: umuC
Funciton: DNA polymerase V, subunit UmuC
umuD
DNA polymerase V, subunit UmuD
umuC
DNA polymerase V, subunit UmuC
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD