Regulon of LexA in Shewanella oneidensis MR-1

Properties
Regulator type:	Transcription factor
TF locus tag:	SO_4603
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Regulog:	LexA - Shewanellaceae
Statistics of regulated genes:
- Genes	16
- Operons	10
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 192 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LexA
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Regulated operons
	Locus Tag	Name	Function
Position: -32 Score: 5.6 Sequence: AACTGTATATTTATACAGTT Locus tag: SO_A0013 Name: umuD Funciton: DNA polymerase V, subunit UmuD Locus tag: SO_A0012 Name: umuC Funciton: DNA polymerase V, subunit UmuC
	SO_A0013	umuD	DNA polymerase V, subunit UmuD
	SO_A0012	umuC	DNA polymerase V, subunit UmuC
Position: -127 Score: 5.6 Sequence: TACTGTATGATTGTACAGTA Locus tag: SO_3430 Name: recA Funciton: Recombinase A Locus tag: SO_3429 Name: recX Funciton: Regulatory protein RecX
	SO_3430	recA	Recombinase A
	SO_3429	recX	Regulatory protein RecX
Position: -45 Score: 5.9 Sequence: TACTGTATATACTAACAGTA Position: -26 Score: 5 Sequence: AACTGTATAGAAAAACAGGA Locus tag: SO_4603 Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) Locus tag: SO_4604 Name: sulA Funciton: Cell division inhibitor sulA
	SO_4603	lexA	SOS-response repressor and protease LexA (EC 3.4.21.88)
	SO_4604	sulA	Cell division inhibitor sulA
Position: -72 Score: 5.8 Sequence: TACTGTATATAAAATCAGTA Position: -50 Score: 5.6 Sequence: TACTGTTTATCAATACAGTG Locus tag: SO_3462 Name: recN Funciton: DNA repair protein RecN
	SO_3462	recN	DNA repair protein RecN
Position: -32 Score: 5.7 Sequence: TACTGTAATTATATCCAGTA Locus tag: SO_3061 Name: topB Funciton: DNA topoisomerase III (EC 5.99.1.2)
	SO_3061	topB	DNA topoisomerase III (EC 5.99.1.2)
Position: -43 Score: 5.4 Sequence: CACTGTTATTATGTACAGCA Locus tag: SO_1819 Name: dinG Funciton: ATP-dependent helicase DinG/Rad3 Locus tag: SO_1818 Name: SO1818 Funciton: protein of unknown function DUF81 Locus tag: SO_1817 Name: SO1817 Funciton: Primosomal replication protein N prime-like protein
	SO_1819	dinG	ATP-dependent helicase DinG/Rad3
	SO_1818	SO1818	protein of unknown function DUF81
	SO_1817	SO1817	Primosomal replication protein N prime-like protein
Position: -31 Score: 6 Sequence: TACTGTATATAAAAACAGTG Locus tag: SO_2604 Name: yebG Funciton: SOS regulon DNA damage-inducible protein Locus tag: SO_2603 Name: yebR Funciton: COG1956, GAF domain-containing protein
	SO_2604	yebG	SOS regulon DNA damage-inducible protein
	SO_2603	yebR	COG1956, GAF domain-containing protein
Position: -44 Score: 5.9 Sequence: AACTGTTTTTATATACAGTA Locus tag: SO_1114 Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7)
	SO_1114	dinB	DNA polymerase IV (EC 2.7.7.7)
Position: -45 Score: 4.3 Sequence: ATATGTATAAATTCACAGTG Locus tag: SO_4364 Name: recG Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
	SO_4364	recG	ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Position: -39 Score: 5.5 Sequence: TACTGTATAAAATTACAGCG Locus tag: SO_2037 Name: xerD Funciton: Site-specific recombinase XerD
	SO_2037	xerD	Site-specific recombinase XerD

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LexA in Shewanella oneidensis MR-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --