Regulon of SoxR in Stenotrophomonas maltophilia K279a
| Regulator type: | Transcription factor |
| TF locus tag: | Smlt1084 |
| Regulator family: | MerR |
| Regulation mode: | activator (repressor) |
| Biological process: | Superoxide stress response |
| Effector: | Paraquat |
| Regulog: | SoxR - Xanthomonadales |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Xanthomonadales
- By trascription factor - SoxR
- By TF family - MerR
- By effector - Paraquat
- By pathway - Superoxide stress response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -55
Score: 5.8 Sequence: ACCTCAACCGGGGTTGAGGT
Locus tag: Smlt2940
Name: PF01042 Funciton: Endoribonuclease L-PSP |
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PF01042
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Endoribonuclease L-PSP
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Position: -140
Score: 5.8 Sequence: ACCTCGACCATGGTTGAGGT
Locus tag: Smlt1830
Name: mexE Funciton: RND transporter, membrane fusion protein
Locus tag: Smlt1831
Name: mexF Funciton: RND transporter, membrane fusion protein
Locus tag: Smlt1832
Name: PF00106 Funciton: oxidoreductase, short-chain dehydrogenase/reductase family
Locus tag: Smlt1833
Name: oprN Funciton: RND transporter, outer membrane protein |
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mexE
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RND transporter, membrane fusion protein
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mexF
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RND transporter, membrane fusion protein
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PF00106
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oxidoreductase, short-chain dehydrogenase/reductase family
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oprN
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RND transporter, outer membrane protein
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Position: -76
Score: 6.1 Sequence: ACCTCAACCAATGTTGAGGT
Locus tag: Smlt2828
Name: sodA Funciton: Manganese superoxide dismutase (EC 1.15.1.1)
Locus tag: Smlt2829
Name: PF01613 Funciton: Putative flavin reductase
Locus tag: Smlt2830
Name: null Funciton: Tetratricopeptide repeat protein |
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sodA
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Manganese superoxide dismutase (EC 1.15.1.1)
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PF01613
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Putative flavin reductase
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Tetratricopeptide repeat protein
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Position: -23
Score: 6.3 Sequence: ACCTCAACTGCAGTTGAGGT
Locus tag: Smlt1083
Name: PF07690 Funciton: Permease of the major facilitator superfamily |
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PF07690
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Permease of the major facilitator superfamily
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Position: -26
Score: 6.3 Sequence: ACCTCAACTGCAGTTGAGGT
Locus tag: Smlt1084
Name: soxR Funciton: Redox-sensitive transcriptional activator, MerR family |
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soxR
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Redox-sensitive transcriptional activator, MerR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |