Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fur in Shewanella woodyi ATCC 51908

Properties
Regulator type: Transcription factor
TF locus tag: Swoo_1842
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: Fur - Shewanellaceae
Statistics of regulated genes:
- Genes 48
- Operons 29
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 505 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -350
Score: 5.4
Sequence: AAATGATAATTATTTGTATAT
Locus tag: Swoo_1506
Name: null
Funciton: Hypothetical protein
Locus tag: Swoo_1507
Name: puiB
Funciton: Uncharacterized iron-regulated membrane protein, PiuB
Hypothetical protein
puiB
Uncharacterized iron-regulated membrane protein, PiuB

Position: -25
Score: 5.4
Sequence: AAATGATAATTATTTGTATAT
Locus tag: Swoo_1505
Name: Sfri_0202
Funciton: Conserved hypothetical protein
Sfri_0202
Conserved hypothetical protein

Position: -79
Score: 5.8
Sequence: TAATGAAAACGATTCGCATTT
Locus tag: Swoo_0790
Name: Sfri_0810
Funciton: Hypothetical protein
Locus tag: Swoo_0791
Name: Sfri_0811
Funciton: Imelysin peptidase family lipoprotein
Locus tag: Swoo_0792
Name: Sfri_0812
Funciton: Protein of unknown function DUF1111
Sfri_0810
Hypothetical protein
Sfri_0811
Imelysin peptidase family lipoprotein
Sfri_0812
Protein of unknown function DUF1111

Position: -83
Score: 5.4
Sequence: GAATGATAACAATTTGCATTA
Locus tag: Swoo_3788
Name: Sfri_4035
Funciton: Conserved hypothetical signal peptide protein, possibly porin
Locus tag: Swoo_3789
Name: null
Funciton: FMN-binding domain-containing protein
Locus tag: Swoo_3790
Name: COG3182
Funciton: PepSY-associated TM helix domain-containing protein
Sfri_4035
Conserved hypothetical signal peptide protein, possibly porin
FMN-binding domain-containing protein
COG3182
PepSY-associated TM helix domain-containing protein

Position: -218
Score: 4.8
Sequence: TAGTGATAATCGTTCTCACAA
Position: -125
Score: 5.6
Sequence: AATTGAAAACTATTATCGTTT
Locus tag: Swoo_3123
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: Swoo_3122
Name: feoB
Funciton: Ferrous iron transport protein B
feoA
Ferrous iron transport protein A
feoB
Ferrous iron transport protein B

Position: -42
Score: 6
Sequence: AAATGATAATGATTATCAGTT
Locus tag: Swoo_1339
Name: null
Funciton: Hypothetical inner membrane protein
Hypothetical inner membrane protein

Position: -66
Score: 5.2
Sequence: CAATGCTAATGATTTTCAACT
Locus tag: Swoo_3151
Name: null
Funciton: Phosphomannomutase (EC 5.4.2.8) clustering with Aga operon
Phosphomannomutase (EC 5.4.2.8) clustering with Aga operon

Position: -70
Score: 6.3
Sequence: AATTGAGAATAATTCTCATTT
Locus tag: Swoo_2977
Name: null
Funciton: Hypothetical inner membrane protein
Hypothetical inner membrane protein

Position: -50
Score: 6.3
Sequence: AAATGAGAACCATTATCATTT
Locus tag: Swoo_4887
Name: null
Funciton: Conserved hypothetical inner membrane protein
Conserved hypothetical inner membrane protein

Position: -80
Score: 6.5
Sequence: AAATGAAAATCATTATCATTT
Locus tag: Swoo_4005
Name: tonB
Funciton: TonB mediated energy transduction system, energy transducer component, TonB
Locus tag: Swoo_4006
Name: exbB
Funciton: TonB mediated energy transduction system, inner membrane component, ExbB
Locus tag: Swoo_4007
Name: exbD
Funciton: TonB mediated energy transduction system, inner membrane component, ExbD
Locus tag: Swoo_4008
Name: hmuB
Funciton: ABC hemin transporter, periplasmic ligand-binding subunit, HmuB
Locus tag: Swoo_4009
Name: hmuC
Funciton: ABC hemin transporter, inner membrane subunit, HmuC
Locus tag: Swoo_4010
Name: hmuD
Funciton: ABC hemin transporter, ATPase subunit, HmuD
tonB
TonB mediated energy transduction system, energy transducer component, TonB
exbB
TonB mediated energy transduction system, inner membrane component, ExbB
exbD
TonB mediated energy transduction system, inner membrane component, ExbD
hmuB
ABC hemin transporter, periplasmic ligand-binding subunit, HmuB
hmuC
ABC hemin transporter, inner membrane subunit, HmuC
hmuD
ABC hemin transporter, ATPase subunit, HmuD

Position: -36
Score: 5.4
Sequence: TGTTGATAATTGTTCGCATTT
Locus tag: Swoo_2294
Name: null
Funciton: Two component transcriptional regulator, Winged helix family
Two component transcriptional regulator, Winged helix family

Position: -176
Score: 5.7
Sequence: TAATGAGAATTATTTGTATTT
Locus tag: Swoo_4766
Name: ftn
Funciton: Ferritin, Ftn
ftn
Ferritin, Ftn

Position: -81
Score: 5.9
Sequence: AATTGATAATCGTTATCAATT
Locus tag: Swoo_0946
Name: null
Funciton: TonB-dependent siderophore receptor
TonB-dependent siderophore receptor

Position: -2
Score: 5.5
Sequence: AAATGATAATCAATCCCATTA
Locus tag: Swoo_3787
Name: Sama_0590
Funciton: TonB-dependent receptor
Sama_0590
TonB-dependent receptor

Position: -62
Score: 5.9
Sequence: AGTTGATAACCATTCTCATTT
Locus tag: Swoo_2428
Name: Sfri_2008
Funciton: Hypothetical protein
Sfri_2008
Hypothetical protein

Position: -51
Score: 6
Sequence: TAATGATAATCGTTATCATCT
Locus tag: Swoo_3375
Name: null
Funciton: TonB-dependent receptor
TonB-dependent receptor

Position: -49
Score: 6.2
Sequence: AAATGATATTAATTCTCATTT
Locus tag: Swoo_1070
Name: Swoo_1070
Funciton: Hypothetical protein
Swoo_1070
Hypothetical protein

Position: -79
Score: 5.5
Sequence: AATTAATAATCGTTTTTATTT
Locus tag: Swoo_0997
Name: fbpB
Funciton: ABC iron(III) transporter, inner membrane subunit, FbpB
Locus tag: Swoo_0998
Name: fbpC
Funciton: ABC iron(III) transporter, ATPase subunit, FbpC
fbpB
ABC iron(III) transporter, inner membrane subunit, FbpB
fbpC
ABC iron(III) transporter, ATPase subunit, FbpC

Position: -57
Score: 5.4
Sequence: AATTGATAACTATTATCATCG
Locus tag: Swoo_0996
Name: fbpA
Funciton: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
fbpA
ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA

Position: -167
Score: 4.5
Sequence: AAATGATAATGCTTAATGTTA
Locus tag: Swoo_3608
Name: bfr2
Funciton: Bacterioferritin subunit 2
Locus tag: Swoo_3607
Name: bfr1
Funciton: Bacterioferritin subunit 1
bfr2
Bacterioferritin subunit 2
bfr1
Bacterioferritin subunit 1

Position: -56
Score: 5.6
Sequence: CATTGAGAATCGTTTTCATTT
Locus tag: Swoo_4187
Name: bfd
Funciton: Bacterioferritin-associated ferredoxin
bfd
Bacterioferritin-associated ferredoxin

Position: -113
Score: 6.5
Sequence: AAATGATAATGATTTTCATTT
Locus tag: Swoo_4004
Name: hmuA
Funciton: TonB-dependent haem/haemoglobin receptor, HmuA
Locus tag: Swoo_4003
Name: huvX
Funciton: Putative heme iron utilization protein
Locus tag: Swoo_4002
Name: null
Funciton: Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein
hmuA
TonB-dependent haem/haemoglobin receptor, HmuA
huvX
Putative heme iron utilization protein
Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein

Position: -62
Score: 5.9
Sequence: TAATGGGAATAATTATCATTT
Locus tag: Swoo_0585
Name: IucABC
Funciton: Aerobactin synthetase , IucABC
Locus tag: Swoo_0586
Name: IucD
Funciton: lysine N6-hydroxylase, IucD
Locus tag: Swoo_0587
Name: SO4423.1
Funciton: TonB-dependent ferric achromobactin receptor
IucABC
Aerobactin synthetase , IucABC
IucD
lysine N6-hydroxylase, IucD
SO4423.1
TonB-dependent ferric achromobactin receptor

Position: -96
Score: 5.7
Sequence: AAATAAAAACCGTTCTCATTA
Locus tag: Swoo_3307
Name: null
Funciton: Conserved hypothetical protein
Locus tag: Swoo_3308
Name: null
Funciton: Iron-regulated membrane protein
Locus tag: Swoo_3309
Name: null
Funciton: Conserved hypothetical inner membrane protein
Conserved hypothetical protein
Iron-regulated membrane protein
Conserved hypothetical inner membrane protein

Position: -48
Score: 5.6
Sequence: AATTGCGAACAATTATCATTA
Locus tag: Swoo_2596
Name: null
Funciton: Probable two-component system sensor kinase
Probable two-component system sensor kinase

Position: -120
Score: 5.8
Sequence: TATTGATAATAAATATCATTT
Locus tag: Swoo_2460
Name: Sbal_0657
Funciton: Hypothetical protein
Sbal_0657
Hypothetical protein

Position: -67
Score: 6.2
Sequence: AAATAAAAATAATTCTCATTT
Locus tag: Swoo_4894
Name: null
Funciton: TonB-dependent siderophore receptor
TonB-dependent siderophore receptor

Position: -85
Score: 5.2
Sequence: AAATACAAAGCGTTATCATTT
Locus tag: Swoo_0123
Name: null
Funciton: Hypothetical outer membrane protein
Hypothetical outer membrane protein

Position: -79
Score: 4.6
Sequence: GAATAAGAATCACTCTTATCT
Locus tag: Swoo_3124
Name: omcA2
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
omcA2
Surface localized decaheme cytochrome c lipoprotein, OmcA
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