Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fur in Shewanella piezotolerans WP3

Properties
Regulator type: Transcription factor
TF locus tag: swp_2938
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: Fur - Shewanellaceae
Statistics of regulated genes:
- Genes 70
- Operons 33
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 505 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -124
Score: 5.3
Sequence: AAATGATAATGATTGCTATTA
Position: -44
Score: 5.7
Sequence: AAATACAAATCGTTATCATTT
Locus tag: swp_4138
Name: Sfri_0202
Funciton: Conserved hypothetical protein
Locus tag: swp_4137
Name: null
Funciton: Hypothetical protein
Locus tag: swp_4136
Name: puiB
Funciton: Uncharacterized iron-regulated membrane protein, PiuB
Sfri_0202
Conserved hypothetical protein
Hypothetical protein
puiB
Uncharacterized iron-regulated membrane protein, PiuB

Position: -9
Score: 5.5
Sequence: CAATGATAATTGTTCGCATTT
Locus tag: swp_2595
Name: null
Funciton: Two component transcriptional regulator, Winged helix family
Two component transcriptional regulator, Winged helix family

Position: -56
Score: 6.1
Sequence: AATTGATAACGATTTTCATTT
Locus tag: swp_3175
Name: null
Funciton: Hypothetical protein
Hypothetical protein

Position: -81
Score: 6
Sequence: AAATGAGAATAATTTGCATTA
Locus tag: swp_4367
Name: Sfri_4035
Funciton: Conserved hypothetical signal peptide protein, possibly porin
Locus tag: swp_4368
Name: null
Funciton: FMN-binding domain-containing protein
Locus tag: swp_4369
Name: COG3182
Funciton: PepSY-associated TM helix domain-containing protein
Sfri_4035
Conserved hypothetical signal peptide protein, possibly porin
FMN-binding domain-containing protein
COG3182
PepSY-associated TM helix domain-containing protein

Position: -86
Score: 5
Sequence: AAATACAACCGATTATCATTT
Locus tag: swp_4927
Name: null
Funciton: Hypothetical outer membrane protein
Hypothetical outer membrane protein

Position: -118
Score: 5.5
Sequence: TAATGATAATAATTATCTTTA
Locus tag: swp_1175
Name: bfr2
Funciton: Bacterioferritin subunit 2
Locus tag: swp_1176
Name: bfr1
Funciton: Bacterioferritin subunit 1
bfr2
Bacterioferritin subunit 2
bfr1
Bacterioferritin subunit 1

Position: -68
Score: 5.6
Sequence: GAATAAAAACAATTCTCATTT
Locus tag: swp_5150
Name: null
Funciton: TonB-dependent siderophore receptor
TonB-dependent siderophore receptor

Position: -76
Score: 5.7
Sequence: AAGTGATAATCATTATCATTC
Locus tag: swp_0953
Name: null
Funciton: TonB-dependent heme receptor
TonB-dependent heme receptor

Position: -46
Score: 6.1
Sequence: AAATGATAATCGTTATCATCT
Locus tag: swp_5137
Name: null
Funciton: Conserved hypothetical inner membrane protein
Conserved hypothetical inner membrane protein

Position: -155
Score: 5.2
Sequence: TATTGATAGCAATTCTCATTA
Locus tag: swp_3303
Name: swp_3303
Funciton: TonB-dependent siderophore receptor
swp_3303
TonB-dependent siderophore receptor

Position: -183
Score: 6.5
Sequence: AAATGAAAATCATTATCATTT
Locus tag: swp_3979
Name: tonB
Funciton: TonB mediated energy transduction system, energy transducer component, TonB
Locus tag: swp_3980
Name: exbB
Funciton: TonB mediated energy transduction system, inner membrane component, ExbB
Locus tag: swp_3981
Name: exbD
Funciton: TonB mediated energy transduction system, inner membrane component, ExbD
Locus tag: swp_3982
Name: hmuB
Funciton: ABC hemin transporter, periplasmic ligand-binding subunit, HmuB
Locus tag: swp_3983
Name: hmuC
Funciton: ABC hemin transporter, inner membrane subunit, HmuC
Locus tag: swp_3984
Name: hmuD
Funciton: ABC hemin transporter, ATPase subunit, HmuD
tonB
TonB mediated energy transduction system, energy transducer component, TonB
exbB
TonB mediated energy transduction system, inner membrane component, ExbB
exbD
TonB mediated energy transduction system, inner membrane component, ExbD
hmuB
ABC hemin transporter, periplasmic ligand-binding subunit, HmuB
hmuC
ABC hemin transporter, inner membrane subunit, HmuC
hmuD
ABC hemin transporter, ATPase subunit, HmuD

Position: -110
Score: 6
Sequence: AAATGAAAACCATTATTATTT
Locus tag: swp_0167
Name: ftn
Funciton: Ferritin, Ftn
ftn
Ferritin, Ftn

Position: -86
Score: 5.8
Sequence: TAATGCAAATCGTTCTCATTT
Locus tag: swp_4049
Name: Sfri_0810
Funciton: Hypothetical protein
Locus tag: swp_4048
Name: Sfri_0811
Funciton: Imelysin peptidase family lipoprotein
Locus tag: swp_4047
Name: Sfri_0812
Funciton: Protein of unknown function DUF1111
Sfri_0810
Hypothetical protein
Sfri_0811
Imelysin peptidase family lipoprotein
Sfri_0812
Protein of unknown function DUF1111

Position: -48
Score: 5.9
Sequence: AGTTGATAATGATTATCATTA
Locus tag: swp_3985
Name: null
Funciton: Coproporphyrinogen III oxidase
Coproporphyrinogen III oxidase

Position: -51
Score: 5.8
Sequence: TAATGATAATGGTTATCATCA
Locus tag: swp_3568
Name: null
Funciton: TonB-dependent receptor
TonB-dependent receptor

Position: -339
Score: 5.7
Sequence: AAACGATAATAATTTTCAATT
Position: -239
Score: 5.3
Sequence: AAATAGTAATGGTTATTATTT
Locus tag: swp_3272
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: swp_3273
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: swp_3274
Name: mtrF
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: swp_3275
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD
Periplasmic decaheme cytochrome c, MtrD
mtrE
Outer membrane protein, MtrE
mtrF
Surface localized decaheme cytochrome c lipoprotein, MtrF
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA

Position: -86
Score: 5.3
Sequence: GATTGATAACTATTCTCATCA
Position: -57
Score: 5.6
Sequence: CATTGAGAATCGTTTTCATTT
Locus tag: swp_0771
Name: bfd
Funciton: Bacterioferritin-associated ferredoxin
bfd
Bacterioferritin-associated ferredoxin

Position: -225
Score: 5.3
Sequence: AAATAATAACCATTACTATTT
Position: -125
Score: 5.7
Sequence: AATTGAAAATTATTATCGTTT
Locus tag: swp_3271
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: swp_3270
Name: feoB
Funciton: Ferrous iron transport protein B
feoA
Ferrous iron transport protein A
feoB
Ferrous iron transport protein B

Position: -143
Score: 6.5
Sequence: AAATGATAATGATTTTCATTT
Locus tag: swp_3978
Name: hmuA
Funciton: TonB-dependent haem/haemoglobin receptor, HmuA
Locus tag: swp_3976
Name: huvX
Funciton: Putative heme iron utilization protein
hmuA
TonB-dependent haem/haemoglobin receptor, HmuA
huvX
Putative heme iron utilization protein

Position: -102
Score: 4.3
Sequence: TGATCATAATTGTTTTAAATC
Locus tag: swp_3069
Name: null
Funciton: Inner membrane protein with PepSY TM helix
Locus tag: swp_3071
Name: null
Funciton: Putative exported protein
Inner membrane protein with PepSY TM helix
Putative exported protein

Position: -456
Score: 5.3
Sequence: AATTGCGAATCATTCACATTT
Locus tag: swp_0160
Name: null
Funciton: Iron-regulated inner membrane protein
Locus tag: swp_0159
Name: null
Funciton: Iron-regulated membrane protein
Iron-regulated inner membrane protein
Iron-regulated membrane protein

Position: -108
Score: 5.2
Sequence: CAACAATAATCATTATCATTT
Locus tag: swp_1134
Name: SO4423.1
Funciton: TonB-dependent ferric achromobactin receptor
SO4423.1
TonB-dependent ferric achromobactin receptor

Position: -60
Score: 5.2
Sequence: AATTGAGAACTATTATCAGCA
Locus tag: swp_4107
Name: fbpA
Funciton: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
Locus tag: swp_4106
Name: fbpB
Funciton: ABC iron(III) transporter, inner membrane subunit, FbpB
Locus tag: swp_4105
Name: fbpC
Funciton: ABC iron(III) transporter, ATPase subunit, FbpC
fbpA
ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
fbpB
ABC iron(III) transporter, inner membrane subunit, FbpB
fbpC
ABC iron(III) transporter, ATPase subunit, FbpC

Position: -104
Score: 5.3
Sequence: AAATGTGAATGATTCGCAATT
Locus tag: swp_0161
Name: viuA
Funciton: TonB-dependent receptor
viuA
TonB-dependent receptor

Position: -91
Score: 5.2
Sequence: GAATAAAAATGGTTATCAATA
Locus tag: swp_3413
Name: null
Funciton: Conserved hypothetical protein
Locus tag: swp_3414
Name: null
Funciton: Iron-regulated membrane protein
Locus tag: swp_3415
Name: null
Funciton: Conserved hypothetical inner membrane protein
Conserved hypothetical protein
Iron-regulated membrane protein
Conserved hypothetical inner membrane protein

Position: -271
Score: 5
Sequence: GGATGCCAATTGTTCTCATTT
Position: -111
Score: 5.6
Sequence: AAATCGTAATAATTATCATTT
Locus tag: swp_0085
Name: pvsA
Funciton: Vibrioferrin ligase/carboxylase protein PvsA
Locus tag: swp_0086
Name: pvsB
Funciton: Vibrioferrin amide bond forming protein PvsB
Locus tag: swp_0087
Name: pvsC
Funciton: Vibrioferrin membrane-spanning transport protein PvsC
Locus tag: swp_0088
Name: pvsD
Funciton: Vibrioferrin biosynthesis protein, PvsD
Locus tag: swp_0089
Name: pvsE
Funciton: Vibrioferrin biosynthesis protein, PvsE
pvsA
Vibrioferrin ligase/carboxylase protein PvsA
pvsB
Vibrioferrin amide bond forming protein PvsB
pvsC
Vibrioferrin membrane-spanning transport protein PvsC
pvsD
Vibrioferrin biosynthesis protein, PvsD
pvsE
Vibrioferrin biosynthesis protein, PvsE

Position: -206
Score: 5.6
Sequence: AAATGATAATTATTACGATTT
Position: -46
Score: 5
Sequence: AAATGAGAACAATTGGCATCC
Locus tag: swp_0084
Name: null
Funciton: Putative siderophore biosynthesis protein, HpcH/HpaI aldolase family
Locus tag: swp_0083
Name: Sfri_3851
Funciton: TonB-dependent siderophore receptor
Putative siderophore biosynthesis protein, HpcH/HpaI aldolase family
Sfri_3851
TonB-dependent siderophore receptor

Position: -94
Score: 5.6
Sequence: TGTTGAGATTAATTATCATTT
Locus tag: swp_0926
Name: null
Funciton: TonB-dependent siderophore receptor
TonB-dependent siderophore receptor

Position: -84
Score: 5.7
Sequence: GAATGAGAATCAATATCATTT
Locus tag: swp_4957
Name: null
Funciton: Outer membrane receptor protein, mostly Fe transport
Locus tag: swp_4956
Name: null
Funciton: Probable zinc protease
Locus tag: swp_4955
Name: null
Funciton: ABC-type uncharacterized transport system, permease and ATPase components
Locus tag: swp_4954
Name: null
Funciton: TonB mediate energy transduction system, conserved hypothetical periplasmic component
Locus tag: swp_4953
Name: ttpc
Funciton: TonB mediated energy transduction system, inner membrane component, TtpC
Locus tag: swp_4952
Name: exbB
Funciton: TonB mediated energy transduction system, inner membrane component, ExbB
Locus tag: swp_4950
Name: exbD
Funciton: TonB mediated energy transduction system, membrane anchored component, ExbD
Locus tag: swp_4949
Name: null
Funciton: Hypothetical protein
Locus tag: swp_4948
Name: null
Funciton: TonB mediated energy transduction system, energy transducer component, TonB
Locus tag: swp_4947
Name: tprX
Funciton: TPR repeat-containing protein
Outer membrane receptor protein, mostly Fe transport
Probable zinc protease
ABC-type uncharacterized transport system, permease and ATPase components
TonB mediate energy transduction system, conserved hypothetical periplasmic component
ttpc
TonB mediated energy transduction system, inner membrane component, TtpC
exbB
TonB mediated energy transduction system, inner membrane component, ExbB
exbD
TonB mediated energy transduction system, membrane anchored component, ExbD
Hypothetical protein
TonB mediated energy transduction system, energy transducer component, TonB
tprX
TPR repeat-containing protein

Position: -43
Score: 6.1
Sequence: TAATGATAATGATTATCAATT
Locus tag: swp_3598
Name: null
Funciton: Hypothetical inner membrane protein
Hypothetical inner membrane protein

Position: 29
Score: 5.6
Sequence: TAATGTTAATAATTATCATTA
Locus tag: swp_2763
Name: null
Funciton: Signalling protein with EAL domain
Signalling protein with EAL domain

Position: -111
Score: 4.6
Sequence: ATATTAGAGGGATTATCATTT
Locus tag: swp_2093
Name: adhC
Funciton: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284)
adhC
S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284)

Position: -67
Score: 5
Sequence: AAATGAGATTTGTTCTCAAAC
Locus tag: swp_3277
Name: mtrH
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrH
mtrH
Surface localized decaheme cytochrome c lipoprotein, MtrH
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