Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fur in Shewanella piezotolerans WP3

Properties
Regulator type: Transcription factor
TF locus tag: swp_2938
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: Fur - Shewanellaceae
Statistics of regulated genes:
- Genes 70
- Operons 33
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 505 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -124
Score: 5.3
Sequence: AAATGATAATGATTGCTATTA
Position: -44
Score: 5.7
Sequence: AAATACAAATCGTTATCATTT
Locus tag: swp_4138
Name: Sfri_0202
Funciton: Conserved hypothetical protein
Locus tag: swp_4137
Name: null
Funciton: Hypothetical protein
Locus tag: swp_4136
Name: puiB
Funciton: Uncharacterized iron-regulated membrane protein, PiuB
swp_4138
Sfri_0202
Conserved hypothetical protein
swp_4137
Hypothetical protein
swp_4136
puiB
Uncharacterized iron-regulated membrane protein, PiuB
Position: -9
Score: 5.5
Sequence: CAATGATAATTGTTCGCATTT
Locus tag: swp_2595
Name: null
Funciton: Two component transcriptional regulator, Winged helix family
swp_2595
Two component transcriptional regulator, Winged helix family
Position: -56
Score: 6.1
Sequence: AATTGATAACGATTTTCATTT
Locus tag: swp_3175
Name: null
Funciton: Hypothetical protein
swp_3175
Hypothetical protein
Position: -81
Score: 6
Sequence: AAATGAGAATAATTTGCATTA
Locus tag: swp_4367
Name: Sfri_4035
Funciton: Conserved hypothetical signal peptide protein, possibly porin
Locus tag: swp_4368
Name: null
Funciton: FMN-binding domain-containing protein
Locus tag: swp_4369
Name: COG3182
Funciton: PepSY-associated TM helix domain-containing protein
swp_4367
Sfri_4035
Conserved hypothetical signal peptide protein, possibly porin
swp_4368
FMN-binding domain-containing protein
swp_4369
COG3182
PepSY-associated TM helix domain-containing protein
Position: -86
Score: 5
Sequence: AAATACAACCGATTATCATTT
Locus tag: swp_4927
Name: null
Funciton: Hypothetical outer membrane protein
swp_4927
Hypothetical outer membrane protein
Position: -118
Score: 5.5
Sequence: TAATGATAATAATTATCTTTA
Locus tag: swp_1175
Name: bfr2
Funciton: Bacterioferritin subunit 2
Locus tag: swp_1176
Name: bfr1
Funciton: Bacterioferritin subunit 1
swp_1175
bfr2
Bacterioferritin subunit 2
swp_1176
bfr1
Bacterioferritin subunit 1
Position: -68
Score: 5.6
Sequence: GAATAAAAACAATTCTCATTT
Locus tag: swp_5150
Name: null
Funciton: TonB-dependent siderophore receptor
swp_5150
TonB-dependent siderophore receptor
Position: -76
Score: 5.7
Sequence: AAGTGATAATCATTATCATTC
Locus tag: swp_0953
Name: null
Funciton: TonB-dependent heme receptor
swp_0953
TonB-dependent heme receptor
Position: -46
Score: 6.1
Sequence: AAATGATAATCGTTATCATCT
Locus tag: swp_5137
Name: null
Funciton: Conserved hypothetical inner membrane protein
swp_5137
Conserved hypothetical inner membrane protein
Position: -155
Score: 5.2
Sequence: TATTGATAGCAATTCTCATTA
Locus tag: swp_3303
Name: swp_3303
Funciton: TonB-dependent siderophore receptor
swp_3303
swp_3303
TonB-dependent siderophore receptor
Position: -183
Score: 6.5
Sequence: AAATGAAAATCATTATCATTT
Locus tag: swp_3979
Name: tonB
Funciton: TonB mediated energy transduction system, energy transducer component, TonB
Locus tag: swp_3980
Name: exbB
Funciton: TonB mediated energy transduction system, inner membrane component, ExbB
Locus tag: swp_3981
Name: exbD
Funciton: TonB mediated energy transduction system, inner membrane component, ExbD
Locus tag: swp_3982
Name: hmuB
Funciton: ABC hemin transporter, periplasmic ligand-binding subunit, HmuB
Locus tag: swp_3983
Name: hmuC
Funciton: ABC hemin transporter, inner membrane subunit, HmuC
Locus tag: swp_3984
Name: hmuD
Funciton: ABC hemin transporter, ATPase subunit, HmuD
swp_3979
tonB
TonB mediated energy transduction system, energy transducer component, TonB
swp_3980
exbB
TonB mediated energy transduction system, inner membrane component, ExbB
swp_3981
exbD
TonB mediated energy transduction system, inner membrane component, ExbD
swp_3982
hmuB
ABC hemin transporter, periplasmic ligand-binding subunit, HmuB
swp_3983
hmuC
ABC hemin transporter, inner membrane subunit, HmuC
swp_3984
hmuD
ABC hemin transporter, ATPase subunit, HmuD
Position: -110
Score: 6
Sequence: AAATGAAAACCATTATTATTT
Locus tag: swp_0167
Name: ftn
Funciton: Ferritin, Ftn
swp_0167
ftn
Ferritin, Ftn
Position: -86
Score: 5.8
Sequence: TAATGCAAATCGTTCTCATTT
Locus tag: swp_4049
Name: Sfri_0810
Funciton: Hypothetical protein
Locus tag: swp_4048
Name: Sfri_0811
Funciton: Imelysin peptidase family lipoprotein
Locus tag: swp_4047
Name: Sfri_0812
Funciton: Protein of unknown function DUF1111
swp_4049
Sfri_0810
Hypothetical protein
swp_4048
Sfri_0811
Imelysin peptidase family lipoprotein
swp_4047
Sfri_0812
Protein of unknown function DUF1111
Position: -48
Score: 5.9
Sequence: AGTTGATAATGATTATCATTA
Locus tag: swp_3985
Name: null
Funciton: Coproporphyrinogen III oxidase
swp_3985
Coproporphyrinogen III oxidase
Position: -51
Score: 5.8
Sequence: TAATGATAATGGTTATCATCA
Locus tag: swp_3568
Name: null
Funciton: TonB-dependent receptor
swp_3568
TonB-dependent receptor
Position: -339
Score: 5.7
Sequence: AAACGATAATAATTTTCAATT
Position: -239
Score: 5.3
Sequence: AAATAGTAATGGTTATTATTT
Locus tag: swp_3272
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: swp_3273
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: swp_3274
Name: mtrF
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: swp_3275
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
swp_3272
mtrD
Periplasmic decaheme cytochrome c, MtrD
swp_3273
mtrE
Outer membrane protein, MtrE
swp_3274
mtrF
Surface localized decaheme cytochrome c lipoprotein, MtrF
swp_3275
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -86
Score: 5.3
Sequence: GATTGATAACTATTCTCATCA
Position: -57
Score: 5.6
Sequence: CATTGAGAATCGTTTTCATTT
Locus tag: swp_0771
Name: bfd
Funciton: Bacterioferritin-associated ferredoxin
swp_0771
bfd
Bacterioferritin-associated ferredoxin
Position: -225
Score: 5.3
Sequence: AAATAATAACCATTACTATTT
Position: -125
Score: 5.7
Sequence: AATTGAAAATTATTATCGTTT
Locus tag: swp_3271
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: swp_3270
Name: feoB
Funciton: Ferrous iron transport protein B
swp_3271
feoA
Ferrous iron transport protein A
swp_3270
feoB
Ferrous iron transport protein B
Position: -143
Score: 6.5
Sequence: AAATGATAATGATTTTCATTT
Locus tag: swp_3978
Name: hmuA
Funciton: TonB-dependent haem/haemoglobin receptor, HmuA
Locus tag: swp_3976
Name: huvX
Funciton: Putative heme iron utilization protein
swp_3978
hmuA
TonB-dependent haem/haemoglobin receptor, HmuA
swp_3976
huvX
Putative heme iron utilization protein
Position: -102
Score: 4.3
Sequence: TGATCATAATTGTTTTAAATC
Locus tag: swp_3069
Name: null
Funciton: Inner membrane protein with PepSY TM helix
Locus tag: swp_3071
Name: null
Funciton: Putative exported protein
swp_3069
Inner membrane protein with PepSY TM helix
swp_3071
Putative exported protein
Position: -456
Score: 5.3
Sequence: AATTGCGAATCATTCACATTT
Locus tag: swp_0160
Name: null
Funciton: Iron-regulated inner membrane protein
Locus tag: swp_0159
Name: null
Funciton: Iron-regulated membrane protein
swp_0160
Iron-regulated inner membrane protein
swp_0159
Iron-regulated membrane protein
Position: -108
Score: 5.2
Sequence: CAACAATAATCATTATCATTT
Locus tag: swp_1134
Name: SO4423.1
Funciton: TonB-dependent ferric achromobactin receptor
swp_1134
SO4423.1
TonB-dependent ferric achromobactin receptor
Position: -60
Score: 5.2
Sequence: AATTGAGAACTATTATCAGCA
Locus tag: swp_4107
Name: fbpA
Funciton: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
Locus tag: swp_4106
Name: fbpB
Funciton: ABC iron(III) transporter, inner membrane subunit, FbpB
Locus tag: swp_4105
Name: fbpC
Funciton: ABC iron(III) transporter, ATPase subunit, FbpC
swp_4107
fbpA
ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
swp_4106
fbpB
ABC iron(III) transporter, inner membrane subunit, FbpB
swp_4105
fbpC
ABC iron(III) transporter, ATPase subunit, FbpC
Position: -104
Score: 5.3
Sequence: AAATGTGAATGATTCGCAATT
Locus tag: swp_0161
Name: viuA
Funciton: TonB-dependent receptor
swp_0161
viuA
TonB-dependent receptor
Position: -91
Score: 5.2
Sequence: GAATAAAAATGGTTATCAATA
Locus tag: swp_3413
Name: null
Funciton: Conserved hypothetical protein
Locus tag: swp_3414
Name: null
Funciton: Iron-regulated membrane protein
Locus tag: swp_3415
Name: null
Funciton: Conserved hypothetical inner membrane protein
swp_3413
Conserved hypothetical protein
swp_3414
Iron-regulated membrane protein
swp_3415
Conserved hypothetical inner membrane protein
Position: -271
Score: 5
Sequence: GGATGCCAATTGTTCTCATTT
Position: -111
Score: 5.6
Sequence: AAATCGTAATAATTATCATTT
Locus tag: swp_0085
Name: pvsA
Funciton: Vibrioferrin ligase/carboxylase protein PvsA
Locus tag: swp_0086
Name: pvsB
Funciton: Vibrioferrin amide bond forming protein PvsB
Locus tag: swp_0087
Name: pvsC
Funciton: Vibrioferrin membrane-spanning transport protein PvsC
Locus tag: swp_0088
Name: pvsD
Funciton: Vibrioferrin biosynthesis protein, PvsD
Locus tag: swp_0089
Name: pvsE
Funciton: Vibrioferrin biosynthesis protein, PvsE
swp_0085
pvsA
Vibrioferrin ligase/carboxylase protein PvsA
swp_0086
pvsB
Vibrioferrin amide bond forming protein PvsB
swp_0087
pvsC
Vibrioferrin membrane-spanning transport protein PvsC
swp_0088
pvsD
Vibrioferrin biosynthesis protein, PvsD
swp_0089
pvsE
Vibrioferrin biosynthesis protein, PvsE
Position: -206
Score: 5.6
Sequence: AAATGATAATTATTACGATTT
Position: -46
Score: 5
Sequence: AAATGAGAACAATTGGCATCC
Locus tag: swp_0084
Name: null
Funciton: Putative siderophore biosynthesis protein, HpcH/HpaI aldolase family
Locus tag: swp_0083
Name: Sfri_3851
Funciton: TonB-dependent siderophore receptor
swp_0084
Putative siderophore biosynthesis protein, HpcH/HpaI aldolase family
swp_0083
Sfri_3851
TonB-dependent siderophore receptor
Position: -94
Score: 5.6
Sequence: TGTTGAGATTAATTATCATTT
Locus tag: swp_0926
Name: null
Funciton: TonB-dependent siderophore receptor
swp_0926
TonB-dependent siderophore receptor
Position: -84
Score: 5.7
Sequence: GAATGAGAATCAATATCATTT
Locus tag: swp_4957
Name: null
Funciton: Outer membrane receptor protein, mostly Fe transport
Locus tag: swp_4956
Name: null
Funciton: Probable zinc protease
Locus tag: swp_4955
Name: null
Funciton: ABC-type uncharacterized transport system, permease and ATPase components
Locus tag: swp_4954
Name: null
Funciton: TonB mediate energy transduction system, conserved hypothetical periplasmic component
Locus tag: swp_4953
Name: ttpc
Funciton: TonB mediated energy transduction system, inner membrane component, TtpC
Locus tag: swp_4952
Name: exbB
Funciton: TonB mediated energy transduction system, inner membrane component, ExbB
Locus tag: swp_4950
Name: exbD
Funciton: TonB mediated energy transduction system, membrane anchored component, ExbD
Locus tag: swp_4949
Name: null
Funciton: Hypothetical protein
Locus tag: swp_4948
Name: null
Funciton: TonB mediated energy transduction system, energy transducer component, TonB
Locus tag: swp_4947
Name: tprX
Funciton: TPR repeat-containing protein
swp_4957
Outer membrane receptor protein, mostly Fe transport
swp_4956
Probable zinc protease
swp_4955
ABC-type uncharacterized transport system, permease and ATPase components
swp_4954
TonB mediate energy transduction system, conserved hypothetical periplasmic component
swp_4953
ttpc
TonB mediated energy transduction system, inner membrane component, TtpC
swp_4952
exbB
TonB mediated energy transduction system, inner membrane component, ExbB
swp_4950
exbD
TonB mediated energy transduction system, membrane anchored component, ExbD
swp_4949
Hypothetical protein
swp_4948
TonB mediated energy transduction system, energy transducer component, TonB
swp_4947
tprX
TPR repeat-containing protein
Position: -43
Score: 6.1
Sequence: TAATGATAATGATTATCAATT
Locus tag: swp_3598
Name: null
Funciton: Hypothetical inner membrane protein
swp_3598
Hypothetical inner membrane protein
Position: 29
Score: 5.6
Sequence: TAATGTTAATAATTATCATTA
Locus tag: swp_2763
Name: null
Funciton: Signalling protein with EAL domain
swp_2763
Signalling protein with EAL domain
Position: -111
Score: 4.6
Sequence: ATATTAGAGGGATTATCATTT
Locus tag: swp_2093
Name: adhC
Funciton: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284)
swp_2093
adhC
S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284)
Position: -67
Score: 5
Sequence: AAATGAGATTTGTTCTCAAAC
Locus tag: swp_3277
Name: mtrH
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrH
swp_3277
mtrH
Surface localized decaheme cytochrome c lipoprotein, MtrH
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