Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fur in Shewanella halifaxensis HAW-EB4

Properties
Regulator type: Transcription factor
TF locus tag: Shal_2482
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: Fur - Shewanellaceae
Statistics of regulated genes:
- Genes 42
- Operons 24
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 505 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -100
Score: 5.7
Sequence: TAATGTAAATCATTCTCATTT
Locus tag: Shal_3528
Name: Sfri_0810
Funciton: Hypothetical protein
Locus tag: Shal_3527
Name: Sfri_0811
Funciton: Imelysin peptidase family lipoprotein
Locus tag: Shal_3526
Name: Sfri_0812
Funciton: Protein of unknown function DUF1111
Shal_3528
Sfri_0810
Hypothetical protein
Shal_3527
Sfri_0811
Imelysin peptidase family lipoprotein
Shal_3526
Sfri_0812
Protein of unknown function DUF1111
Position: -103
Score: 5.8
Sequence: TAACGATAATGATTTTCATTT
Locus tag: Shal_2698
Name: null
Funciton: Hypothetical protein
Shal_2698
Hypothetical protein
Position: -126
Score: 5.7
Sequence: AATTGAAAATTATTATCGTTT
Locus tag: Shal_2777
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: Shal_2776
Name: feoB
Funciton: Ferrous iron transport protein B
Shal_2777
feoA
Ferrous iron transport protein A
Shal_2776
feoB
Ferrous iron transport protein B
Position: -44
Score: 6.1
Sequence: AATTGATAATGATTATCAATT
Locus tag: Shal_1179
Name: null
Funciton: Hypothetical inner membrane protein
Shal_1179
Hypothetical inner membrane protein
Position: -35
Score: 5.2
Sequence: TAATATAAACAATTATCATTT
Locus tag: Shal_1861
Name: null
Funciton: Signalling protein with EAL domain
Shal_1861
Signalling protein with EAL domain
Position: -47
Score: 6.3
Sequence: AAATGATAACCATTATCATTT
Locus tag: Shal_4274
Name: null
Funciton: Conserved hypothetical inner membrane protein
Shal_4274
Conserved hypothetical inner membrane protein
Position: -207
Score: 6.5
Sequence: AAATGAAAATCATTATCATTT
Locus tag: Shal_3400
Name: tonB
Funciton: TonB mediated energy transduction system, energy transducer component, TonB
Locus tag: Shal_3401
Name: exbB
Funciton: TonB mediated energy transduction system, inner membrane component, ExbB
Locus tag: Shal_3402
Name: exbD
Funciton: TonB mediated energy transduction system, inner membrane component, ExbD
Locus tag: Shal_3403
Name: hmuB
Funciton: ABC hemin transporter, periplasmic ligand-binding subunit, HmuB
Locus tag: Shal_3404
Name: hmuC
Funciton: ABC hemin transporter, inner membrane subunit, HmuC
Locus tag: Shal_3405
Name: hmuD
Funciton: ABC hemin transporter, ATPase subunit, HmuD
Shal_3400
tonB
TonB mediated energy transduction system, energy transducer component, TonB
Shal_3401
exbB
TonB mediated energy transduction system, inner membrane component, ExbB
Shal_3402
exbD
TonB mediated energy transduction system, inner membrane component, ExbD
Shal_3403
hmuB
ABC hemin transporter, periplasmic ligand-binding subunit, HmuB
Shal_3404
hmuC
ABC hemin transporter, inner membrane subunit, HmuC
Shal_3405
hmuD
ABC hemin transporter, ATPase subunit, HmuD
Position: -111
Score: 6
Sequence: AAATGAAAACCATTATTATTT
Locus tag: Shal_4189
Name: ftn
Funciton: Ferritin, Ftn
Shal_4189
ftn
Ferritin, Ftn
Position: -34
Score: 5.6
Sequence: AAATGAAAATGATTCGCATTG
Locus tag: Shal_2220
Name: null
Funciton: Two component transcriptional regulator, Winged helix family
Shal_2220
Two component transcriptional regulator, Winged helix family
Position: -67
Score: 5.6
Sequence: AAATGAGAATGAATAGCATTA
Locus tag: Shal_0766
Name: Sama_0590
Funciton: TonB-dependent receptor
Shal_0766
Sama_0590
TonB-dependent receptor
Position: -62
Score: 5.9
Sequence: TGTTGATAATCATTCTCATTT
Locus tag: Shal_2195
Name: Sfri_2008
Funciton: Hypothetical protein
Shal_2195
Sfri_2008
Hypothetical protein
Position: -87
Score: 4.4
Sequence: AAATACGTCCCATTATCATTT
Locus tag: Shal_0192
Name: null
Funciton: Hypothetical outer membrane protein
Shal_0192
Hypothetical outer membrane protein
Position: -51
Score: 5.6
Sequence: TAATAAGAATCGTTATCATCT
Locus tag: Shal_3021
Name: null
Funciton: TonB-dependent receptor
Shal_3021
TonB-dependent receptor
Position: -121
Score: 4.3
Sequence: TAGTGATAATGAAAATCACTA
Position: -88
Score: 4.3
Sequence: TGTTGATATTTAACCTTATTT
Locus tag: Shal_3179
Name: bfr2
Funciton: Bacterioferritin subunit 2
Locus tag: Shal_3178
Name: bfr1
Funciton: Bacterioferritin subunit 1
Shal_3179
bfr2
Bacterioferritin subunit 2
Shal_3178
bfr1
Bacterioferritin subunit 1
Position: -58
Score: 5.5
Sequence: CACTGAGAATCATTTTCATTT
Locus tag: Shal_3649
Name: bfd
Funciton: Bacterioferritin-associated ferredoxin
Shal_3649
bfd
Bacterioferritin-associated ferredoxin
Position: -336
Score: 5.7
Sequence: AAACGATAATAATTTTCAATT
Locus tag: Shal_2778
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: Shal_2779
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: Shal_2780
Name: mtrF
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Shal_2781
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shal_2778
mtrD
Periplasmic decaheme cytochrome c, MtrD
Shal_2779
mtrE
Outer membrane protein, MtrE
Shal_2780
mtrF
Surface localized decaheme cytochrome c lipoprotein, MtrF
Shal_2781
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -144
Score: 6.5
Sequence: AAATGATAATGATTTTCATTT
Locus tag: Shal_3399
Name: hmuA
Funciton: TonB-dependent haem/haemoglobin receptor, HmuA
Locus tag: Shal_3398
Name: huvX
Funciton: Putative heme iron utilization protein
Locus tag: Shal_3397
Name: null
Funciton: Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein
Shal_3399
hmuA
TonB-dependent haem/haemoglobin receptor, HmuA
Shal_3398
huvX
Putative heme iron utilization protein
Shal_3397
Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein
Position: -96
Score: 5.1
Sequence: GAATGGAAACGGTTCTCAATT
Locus tag: Shal_1257
Name: null
Funciton: Conserved hypothetical protein
Locus tag: Shal_1256
Name: null
Funciton: Iron-regulated membrane protein
Locus tag: Shal_1255
Name: null
Funciton: Conserved hypothetical inner membrane protein
Shal_1257
Conserved hypothetical protein
Shal_1256
Iron-regulated membrane protein
Shal_1255
Conserved hypothetical inner membrane protein
Position: -64
Score: 5.4
Sequence: AATTGAGAATTATTATCAGTC
Locus tag: Shal_0897
Name: fbpA
Funciton: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
Locus tag: Shal_0898
Name: fbpB
Funciton: ABC iron(III) transporter, inner membrane subunit, FbpB
Locus tag: Shal_0899
Name: fbpC
Funciton: ABC iron(III) transporter, ATPase subunit, FbpC
Shal_0897
fbpA
ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
Shal_0898
fbpB
ABC iron(III) transporter, inner membrane subunit, FbpB
Shal_0899
fbpC
ABC iron(III) transporter, ATPase subunit, FbpC
Position: -68
Score: 6
Sequence: AAATAAAAATAGTTCTCATTT
Locus tag: Shal_4287
Name: null
Funciton: TonB-dependent siderophore receptor
Shal_4287
TonB-dependent siderophore receptor
Position: -42
Score: 5.8
Sequence: AAAGGAGAATAATTCTCATTT
Locus tag: Shal_3020
Name: null
Funciton: TonB-dependent receptor
Shal_3020
TonB-dependent receptor
Position: -54
Score: 5.9
Sequence: ATTTGATAATGATTATCATTT
Locus tag: Shal_3411
Name: null
Funciton: Coproporphyrinogen III oxidase
Shal_3411
Coproporphyrinogen III oxidase
Position: -78
Score: 4.8
Sequence: AAATGGAATTAGTTATAATCT
Locus tag: Shal_3111
Name: adhC
Funciton: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284)
Shal_3111
adhC
S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284)
Position: -65
Score: 5.3
Sequence: AGGTGAGAATAATTCTCATAA
Locus tag: Shal_2783
Name: mtrH
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrH
Shal_2783
mtrH
Surface localized decaheme cytochrome c lipoprotein, MtrH
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