Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fur in Shewanella oneidensis MR-1

Properties
Regulator type: Transcription factor
TF locus tag: SO1937
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: Fur - Shewanellaceae
Statistics of regulated genes:
- Genes 58
- Operons 32
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 505 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -40
Score: 4.9
Sequence: AGGTAGGAACAATTCTCATTT
Locus tag: SO0719
Name: null
Funciton: TonB-dependent receptor
SO0719
TonB-dependent receptor
Position: -2
Score: 5.6
Sequence: AAATGATATTGATTCTCGTTT
Locus tag: SO2426
Name: null
Funciton: Two component transcriptional regulator, Winged helix family
SO2426
Two component transcriptional regulator, Winged helix family
Position: -60
Score: 5.4
Sequence: GACTGATAATAGTTTTCATTT
Locus tag: SO2841
Name: null
Funciton: Hypothetical protein
SO2841
Hypothetical protein
Position: -98
Score: 5.4
Sequence: TAATAAAAATCGTTACCATTT
Locus tag: SO4423.1
Name: SO4423.1
Funciton: TonB-dependent ferric achromobactin receptor
SO4423.1
SO4423.1
TonB-dependent ferric achromobactin receptor
Position: -62
Score: 6.1
Sequence: AAATAATAACAATTCTCATTT
Locus tag: SO0798
Name: null
Funciton: TonB-dependent outer membrane receptor
Locus tag: SO0797
Name: null
Funciton: Periplasmic thioredoxin-family protein
SO0798
TonB-dependent outer membrane receptor
SO0797
Periplasmic thioredoxin-family protein
Position: -208
Score: 5.7
Sequence: AGATGAGAACGATTTGCATTT
Locus tag: SO3030
Name: pubA
Funciton: Putrescine monooxygenase, PubA
Locus tag: SO3031
Name: pubB
Funciton: N-hydroxyputrescine-succinyl CoA transferase, PubB
Locus tag: SO3032
Name: pubC
Funciton: NTP-dependent putrebactin synthetase, PubC
Locus tag: SO3033
Name: putA
Funciton: TonB-dependent ferric putrebactin siderophore receptor, PutA
Locus tag: SO3034
Name: putB
Funciton: Ferric putrebactin reductase, PutB
SO3030
pubA
Putrescine monooxygenase, PubA
SO3031
pubB
N-hydroxyputrescine-succinyl CoA transferase, PubB
SO3032
pubC
NTP-dependent putrebactin synthetase, PubC
SO3033
putA
TonB-dependent ferric putrebactin siderophore receptor, PutA
SO3034
putB
Ferric putrebactin reductase, PutB
Position: -44
Score: 6
Sequence: AAATGATAATGATTATCAGTT
Locus tag: SO3344
Name: null
Funciton: Hypothetical inner membrane protein
SO3344
Hypothetical inner membrane protein
Position: -60
Score: 6
Sequence: TAATGAGAATTGTTATCATCT
Locus tag: SO4740
Name: null
Funciton: Conserved hypothetical inner membrane protein
SO4740
Conserved hypothetical inner membrane protein
Position: -108
Score: 5.1
Sequence: AAATGATAATAATTATTGATC
Locus tag: SO3914
Name: null
Funciton: TonB-dependent siderophore receptor
Locus tag: SO3913
Name: piuC
Funciton: Iron-uptake factor PiuC
SO3914
TonB-dependent siderophore receptor
SO3913
piuC
Iron-uptake factor PiuC
Position: -30
Score: 5.3
Sequence: AATTGAAAATGATTTTCACTG
Locus tag: SO1755
Name: null
Funciton: Phosphomannomutase (EC 5.4.2.8) clustering with Aga operon
SO1755
Phosphomannomutase (EC 5.4.2.8) clustering with Aga operon
Position: -49
Score: 5
Sequence: GGATGGAAATCATTATCATTC
Locus tag: SO1482
Name: null
Funciton: TonB-dependent receptor
SO1482
TonB-dependent receptor
Position: -67
Score: 5.5
Sequence: TGTTGAGAACAATTCTCATCT
Locus tag: SO3062
Name: null
Funciton: Hypothetical inner membrane protein
SO3062
Hypothetical inner membrane protein
Position: -82
Score: 5.5
Sequence: ATGTGAGAATTATTCTCATCT
Locus tag: SO1580
Name: null
Funciton: TonB-dependent heme receptor
SO1580
TonB-dependent heme receptor
Position: -97
Score: 5.7
Sequence: AAATAGAAATCATTATCATTT
Locus tag: SO3670
Name: tonB
Funciton: TonB mediated energy transduction system, energy transducer component, TonB
Locus tag: SO3671
Name: exbB
Funciton: TonB mediated energy transduction system, inner membrane component, ExbB
Locus tag: SO3672
Name: exbD
Funciton: TonB mediated energy transduction system, inner membrane component, ExbD
Locus tag: SO3673
Name: hmuB
Funciton: ABC hemin transporter, periplasmic ligand-binding subunit, HmuB
Locus tag: SO3674
Name: hmuC
Funciton: ABC hemin transporter, inner membrane subunit, HmuC
Locus tag: SO_3675
Name: hmuD
Funciton: ABC hemin transporter, ATPase subunit, HmuD
SO3670
tonB
TonB mediated energy transduction system, energy transducer component, TonB
SO3671
exbB
TonB mediated energy transduction system, inner membrane component, ExbB
SO3672
exbD
TonB mediated energy transduction system, inner membrane component, ExbD
SO3673
hmuB
ABC hemin transporter, periplasmic ligand-binding subunit, HmuB
SO3674
hmuC
ABC hemin transporter, inner membrane subunit, HmuC
SO_3675
hmuD
ABC hemin transporter, ATPase subunit, HmuD
Position: -125
Score: 5.2
Sequence: TAATGAGAATGCTTTTAATTA
Locus tag: SO1111
Name: bfr2
Funciton: Bacterioferritin subunit 2
Locus tag: SO1112
Name: bfr1
Funciton: Bacterioferritin subunit 1
SO1111
bfr2
Bacterioferritin subunit 2
SO1112
bfr1
Bacterioferritin subunit 1
Position: -55
Score: 5.3
Sequence: ATTTGATAAGCGTTTTCATTT
Locus tag: SO0583
Name: bfd
Funciton: Bacterioferritin-associated ferredoxin
SO0583
bfd
Bacterioferritin-associated ferredoxin
Position: -370
Score: 5.4
Sequence: TAACGATAATAGTTTTCAATT
Locus tag: SO1782
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: SO1781
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: SO1780
Name: mtrF
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrF
SO1782
mtrD
Periplasmic decaheme cytochrome c, MtrD
SO1781
mtrE
Outer membrane protein, MtrE
SO1780
mtrF
Surface localized decaheme cytochrome c lipoprotein, MtrF
Position: -133
Score: 5.7
Sequence: AAATGAAAATCATTTTTATCA
Locus tag: SO0139
Name: ftn
Funciton: Ferritin, Ftn
SO0139
ftn
Ferritin, Ftn
Position: -121
Score: 5.4
Sequence: AATTGAAAACTATTATCGTTA
Locus tag: SO1783
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: SO1784
Name: feoB
Funciton: Ferrous iron transport protein B
SO1783
feoA
Ferrous iron transport protein A
SO1784
feoB
Ferrous iron transport protein B
Position: -64
Score: 5.6
Sequence: TAATGAGATTTGTTCTTATTT
Locus tag: SO1779
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
SO1779
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -169
Score: 5.7
Sequence: AAATGATAATGATTTCTATTT
Locus tag: SO3669
Name: hmuA
Funciton: TonB-dependent haem/haemoglobin receptor, HmuA
Locus tag: SO3668
Name: huvX
Funciton: Putative heme iron utilization protein
Locus tag: SO3667
Name: null
Funciton: Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein
SO3669
hmuA
TonB-dependent haem/haemoglobin receptor, HmuA
SO3668
huvX
Putative heme iron utilization protein
SO3667
Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein
Position: -185
Score: 5.4
Sequence: TTTTGATAATAAATATCATTT
Locus tag: SO1188
Name: null
Funciton: Inner membrane protein with PepSY TM helix
Locus tag: SO1189
Name: null
Funciton: Putative exported protein
Locus tag: SO1190
Name: null
Funciton: putative exported protein
SO1188
Inner membrane protein with PepSY TM helix
SO1189
Putative exported protein
SO1190
putative exported protein
Position: -146
Score: 5.2
Sequence: TATTGCGAACTATTCTCATCA
Locus tag: SO0447
Name: null
Funciton: Iron-regulated inner membrane protein
Locus tag: SO0448
Name: null
Funciton: Iron-regulated inner membrane protein
Locus tag: SO0449
Name: null
Funciton: Iron-regulated membrane protein
SO0447
Iron-regulated inner membrane protein
SO0448
Iron-regulated inner membrane protein
SO0449
Iron-regulated membrane protein
Position: -86
Score: 5.3
Sequence: AAATCAAATCCATTCTCATTA
Locus tag: SO4700
Name: null
Funciton: Hypothetical outer membrane protein
SO4700
Hypothetical outer membrane protein
Position: -50
Score: 6.1
Sequence: TATTGAAAATTATTATCATTT
Locus tag: SO_4523
Name: irgA
Funciton: TonB-dependent receptor
SO_4523
irgA
TonB-dependent receptor
Position: -100
Score: 5.8
Sequence: AAATGATATTGGTTATCAATT
Locus tag: SO4516
Name: viuA
Funciton: TonB-dependent receptor
SO4516
viuA
TonB-dependent receptor
Position: -76
Score: 5.7
Sequence: AACTGATAACTATTATCATTA
Locus tag: SO0744
Name: fbpA
Funciton: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
Locus tag: SO0743
Name: fbpB
Funciton: ABC iron(III) transporter, inner membrane subunit, FbpB
Locus tag: SO0742
Name: fbpC
Funciton: ABC iron(III) transporter, ATPase subunit, FbpC
SO0744
fbpA
ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
SO0743
fbpB
ABC iron(III) transporter, inner membrane subunit, FbpB
SO0742
fbpC
ABC iron(III) transporter, ATPase subunit, FbpC
Position: -59
Score: 4.7
Sequence: TTATGATAATGAACATTATTT
Locus tag: SO3371
Name: null
Funciton: Cytochrome B561
Locus tag: SO3370
Name: yceI
Funciton: Protein yceI precursor
SO3371
Cytochrome B561
SO3370
yceI
Protein yceI precursor
Position: -273
Score: 5.7
Sequence: AAATGATATTGTTTATCATTT
Locus tag: SO3406
Name: null
Funciton: Conserved hypothetical protein
Locus tag: SO3407
Name: null
Funciton: Iron-regulated membrane protein
Locus tag: SO3408
Name: null
Funciton: Conserved hypothetical inner membrane protein
SO3406
Conserved hypothetical protein
SO3407
Iron-regulated membrane protein
SO3408
Conserved hypothetical inner membrane protein
Position: -220
Score: 5.8
Sequence: AAATGACAATAGTTGTCATTT
Locus tag: SO3025
Name: null
Funciton: Periplasmic esterase
SO3025
Periplasmic esterase
Position: -44
Score: 5.6
Sequence: AAATGCGAATAATTAGCAATT
Locus tag: SO2039
Name: null
Funciton: Signalling protein with EAL domain
SO2039
Signalling protein with EAL domain
Position: -116
Score: 5.7
Sequence: AAATAAAAACAATTCTTATTT
Locus tag: SO4743
Name: null
Funciton: TonB-dependent siderophore receptor
SO4743
TonB-dependent siderophore receptor
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