Regulon of Cobalamin in Thermus thermophilus HB27
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Deinococcus-Thermus |
| Under regulation: | |
| - Genes | 24 |
| - Operons | 3 |
Member of regulog collections
- By taxonomy - Deinococcus-Thermus
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -209
Score: 45.9 Sequence: AGGGGGAAGACCGGT...
Locus tag: TTP0007
Name: hoxN Funciton: HoxN/HupN/NixA family cobalt transporter
Locus tag: TTP0008
Name: cbiD Funciton: Cobalt-precorrin-6 synthase, anaerobic
Locus tag: TTP0009
Name: cbiC Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: TTP0010
Name: cbiET Funciton: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Locus tag: TTP0011
Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: TTP0012
Name: cbiF Funciton: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
Locus tag: TTP0013
Name: cbiH Funciton: Cobalt-precorrin-3b C17-methyltransferase
Locus tag: TTP0014
Name: cbiG Funciton: Cobalamin biosynthesis protein CbiG
Locus tag: TTP0015
Name: cbiX Funciton: Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)
Locus tag: TTP0016
Name: DUF3209 Funciton: Hypothetical protein implicated in coenzyme B12 biosynthesis
Locus tag: TTP0017
Name: cobA Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: TTP0018
Name: bluB Funciton: Cob(II)yrinic acid a,c-diamide reductase
Locus tag: TTP0019
Name: cbiB Funciton: Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)
Locus tag: TTP0020
Name: TTP0020 Funciton: HEPN domain-containing nucleotidyltransferase
Locus tag: TTP0021
Name: TTP0021 Funciton: Nucleotidyltransferase
Locus tag: TTP0022
Name: cobD Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Locus tag: TTP0023
Name: cbiP-cobU Funciton: Cobyric acid synthase / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
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hoxN
|
HoxN/HupN/NixA family cobalt transporter
|
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cbiD
|
Cobalt-precorrin-6 synthase, anaerobic
|
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|
cbiC
|
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
|
||
|
cbiET
|
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
|
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|
cbiL
|
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
|
||
|
cbiF
|
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
|
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|
cbiH
|
Cobalt-precorrin-3b C17-methyltransferase
|
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|
cbiG
|
Cobalamin biosynthesis protein CbiG
|
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|
cbiX
|
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)
|
||
|
DUF3209
|
Hypothetical protein implicated in coenzyme B12 biosynthesis
|
||
|
cobA
|
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
|
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|
bluB
|
Cob(II)yrinic acid a,c-diamide reductase
|
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|
cbiB
|
Adenosylcobinamide-phosphate synthase (EC 6.3.1.10)
|
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TTP0020
|
HEPN domain-containing nucleotidyltransferase
|
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TTP0021
|
Nucleotidyltransferase
|
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|
cobD
|
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
|
||
|
cbiP-cobU
|
Cobyric acid synthase / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
|
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|
Position: -240
Score: 35.6 Sequence: GGAAGTCCGGTGAAA...
Locus tag: TTP0160
Name: achX Funciton: Acyl-CoA hydrolase (EC 3.1.2.20)
Locus tag: TTP0161
Name: nrdB Funciton: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Locus tag: TTP0162
Name: nrdA Funciton: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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achX
|
Acyl-CoA hydrolase (EC 3.1.2.20)
|
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nrdB
|
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
|
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nrdA
|
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
|
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Position: -291
Score: 60.5 Sequence: CCAGGTCCCGTAGCC...
Locus tag: TTC0390
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: TTC0391
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component
Locus tag: TTC0392
Name: btuD Funciton: Vitamin B12 ABC transporter, ATP-binding component
Locus tag: TTC0393
Name: COG3411 Funciton: Thioredoxin domain protein |
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btuF
|
Vitamin B12 ABC transporter, B12-binding component BtuF
|
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btuC
|
Vitamin B12 ABC transporter, permease component
|
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btuD
|
Vitamin B12 ABC transporter, ATP-binding component
|
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COG3411
|
Thioredoxin domain protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |