Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Corynebacterium amycolatum SK46

Properties
Regulator type: Transcription factor
TF locus tag: CORAM0001_0857
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Corynebacteriaceae
Statistics of regulated genes:
- Genes 19
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 109 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -134
Score: 4
Sequence: TCGGAAAAAAGTTCGA
Position: -91
Score: 4.9
Sequence: TCGAATGGGTGTACGA
Locus tag: CORAM0001_1381
Name: cg2683
Funciton: Conserved hypothetical protein
cg2683
Conserved hypothetical protein

Position: -141
Score: 5.2
Sequence: TCGAACACGCGTGCTA
Locus tag: CORAM0001_0623
Name: helZ
Funciton: SNF2 family DNA/RNA helicase
Locus tag: CORAM0001_0624
Name: cg1317
Funciton: SWF/SNF family helicase
Locus tag: CORAM0001_0625
Name: sbcD
Funciton: DNA repair exonuclease SbcD
Locus tag: CORAM0001_0626
Name: sbcC
Funciton: ATPase involved in DNA repair
helZ
SNF2 family DNA/RNA helicase
cg1317
SWF/SNF family helicase
sbcD
DNA repair exonuclease SbcD
sbcC
ATPase involved in DNA repair

Position: -89
Score: 5
Sequence: TCGAACGTACGTGCTA
Locus tag: CORAM0001_0278
Name: cg0713
Funciton: Conserved hypothetical protein
Locus tag: CORAM0001_0279
Name: dinP
Funciton: DNA polymerase IV
cg0713
Conserved hypothetical protein
dinP
DNA polymerase IV

Position: -89
Score: 5.1
Sequence: TCGAATGGGTGTGCGA
Locus tag: CORAM0001_0220
Name: cg2683
Funciton: Conserved hypothetical protein
cg2683
Conserved hypothetical protein

Position: -140
Score: 4
Sequence: TCGAACAGGGTTTCGC
Locus tag: CORAM0001_0838
Name: recA
Funciton: Recombination protein RecA
Locus tag: CORAM0001_0839
Name: recX
Funciton: Recombination regulator RecX
recA
Recombination protein RecA
recX
Recombination regulator RecX

Position: -79
Score: 4.5
Sequence: CTGAACACATGTGCGA
Locus tag: CORAM0001_1690
Name: uvrA
Funciton: Excinuclease ABC, subunit A
uvrA
Excinuclease ABC, subunit A

Position: -123
Score: 5.5
Sequence: TCGAACAGATGTGCGA
Locus tag: CORAM0001_1116
Name: cg2381
Funciton: Conserved hypothetical protein
cg2381
Conserved hypothetical protein

Position: -49
Score: 4.8
Sequence: TCGAAAATACGTTTGA
Locus tag: CORAM0001_0285
Name: dnaE2
Funciton: Error-prone DNA polymerase
dnaE2
Error-prone DNA polymerase

Position: -227
Score: 4.4
Sequence: TCAAACGACTGTTCGA
Locus tag: CORAM0001_0857
Name: lexA
Funciton: SOS-response repressor LexA
lexA
SOS-response repressor LexA

Position: -101
Score: 5.2
Sequence: TCGAATGGATGTTCGA
Locus tag: CORAM0001_0615
Name: modC
Funciton: Modification methylase NgoMIV (EC 2.1.1.37)
Locus tag: CORAM0001_0617
Name: blt
Funciton: Predicted permease
modC
Modification methylase NgoMIV (EC 2.1.1.37)
blt
Predicted permease

Position: -63
Score: 4.1
Sequence: ACAAACAGCTGTTCGA
Locus tag: CORAM0001_2122
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: CORAM0001_2123
Name: ruvA
Funciton: Holliday junction DNA helicase (EC 3.6.4.12) motor protein
Locus tag: CORAM0001_2124
Name: ruvB
Funciton: holliday junction DNA helicase RuvB (EC 3.6.4.12)
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
ruvA
Holliday junction DNA helicase (EC 3.6.4.12) motor protein
ruvB
holliday junction DNA helicase RuvB (EC 3.6.4.12)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD