Regulon of CcpA in Lactobacillus salivarius subsp. salivarius UCC118
| Regulator type: | Transcription factor |
| TF locus tag: | LSL_0420 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein; Fructose-1,6-bisphosphate |
| Regulog: | CcpA - Lactobacillaceae |
| Statistics of regulated genes: | |
| - Genes | 81 |
| - Operons | 33 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - CcpA
- By TF family - LacI
- By effector - HPr, phosphocarrier protein
- By effector - Fructose-1,6-bisphosphate
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -71
Score: 4.2 Sequence: TTGTAAGCATTTACGA
Locus tag: LSL_0560
Name: manO Funciton: Predicted regulator of the mannose operon, ManO |
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manO
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Predicted regulator of the mannose operon, ManO
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Position: -88
Score: 4 Sequence: GTGAAAGCTATTTCTT
Locus tag: LSL_1294
Name: glgB Funciton: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Locus tag: LSL_1293
Name: glgC Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: LSL_1292
Name: glgD Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: LSL_1291
Name: glgA Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Locus tag: LSL_1290
Name: glgP Funciton: Glycogen phosphorylase (EC 2.4.1.1)
Locus tag: LSL_1289
Name: amy1 Funciton: Neopullulanase (EC 3.2.1.135) |
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glgB
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1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
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glgC
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Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
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glgD
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Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
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glgA
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Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
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glgP
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Glycogen phosphorylase (EC 2.4.1.1)
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amy1
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Neopullulanase (EC 3.2.1.135)
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Position: -75
Score: 4.2 Sequence: TTGAAAGCGTAATATT
Locus tag: LSL_1538
Name: coaA Funciton: Pantothenate kinase (EC 2.7.1.33)
Locus tag: LSL_1537
Name: guaA Funciton: GMP synthase (EC 6.3.5.2) |
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coaA
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Pantothenate kinase (EC 2.7.1.33)
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guaA
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GMP synthase (EC 6.3.5.2)
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Position: -149
Score: 4.4 Sequence: GAATAAGCGTTTTCAT
Position: -43
Score: 4.8 Sequence: AAGAAAACGTTTTCTT
Locus tag: LSL_0110
Name: glpK Funciton: Glycerol kinase (EC 2.7.1.30)
Locus tag: LSL_0111
Name: glpD Funciton: Alpha-glycerophosphate oxidase (EC 1.1.3.21)
Locus tag: LSL_0112
Name: glpF Funciton: Glycerol uptake facilitator protein |
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glpK
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Glycerol kinase (EC 2.7.1.30)
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glpD
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Alpha-glycerophosphate oxidase (EC 1.1.3.21)
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glpF
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Glycerol uptake facilitator protein
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Position: -18
Score: 4.1 Sequence: TTGAAAGGGGTATAAT
Locus tag: LSL_1806
Name: rpiA Funciton: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
Locus tag: LSL_1807
Name: rpe Funciton: Ribulose-phosphate 3-epimerase (EC 5.1.3.1) |
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rpiA
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Ribose 5-phosphate isomerase A (EC 5.3.1.6)
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rpe
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Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
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Position: -76
Score: 4.3 Sequence: AAGGAAGCGGTAACAA
Locus tag: LSL_1296
Name: LSL_1296 Funciton: Hypothetical protein
Locus tag: LSL_1295
Name: nplT Funciton: Neopullulanase (EC 3.2.1.135) |
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LSL_1296
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Hypothetical protein
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nplT
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Neopullulanase (EC 3.2.1.135)
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Position: -109
Score: 4.3 Sequence: TAGAAATCGTTTACAC
Locus tag: LSL_0086
Name: manL Funciton: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Locus tag: LSL_0087
Name: manM Funciton: Mannose-specific PTS system, IIC component (EC 2.7.1.69)
Locus tag: LSL_0088
Name: manN Funciton: Mannose-specific PTS system, IID component (EC 2.7.1.69)
Locus tag: LSL_0089
Name: manO Funciton: Predicted regulator of the mannose operon, ManO |
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manL
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Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
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manM
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Mannose-specific PTS system, IIC component (EC 2.7.1.69)
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manN
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Mannose-specific PTS system, IID component (EC 2.7.1.69)
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manO
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Predicted regulator of the mannose operon, ManO
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Position: -131
Score: 4.3 Sequence: TAGTAAGTGTTTTCAA
Position: -61
Score: 4.1 Sequence: ATGAAAAGGCTTTATT
Locus tag: LSL_0654
Name: manL Funciton: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Locus tag: LSL_0655
Name: manM Funciton: Mannose-specific PTS system, IIC component (EC 2.7.1.69)
Locus tag: LSL_0656
Name: manN Funciton: Mannose-specific PTS system, IID component (EC 2.7.1.69) |
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manL
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Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
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manM
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Mannose-specific PTS system, IIC component (EC 2.7.1.69)
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manN
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Mannose-specific PTS system, IID component (EC 2.7.1.69)
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Position: -53
Score: 4.6 Sequence: AAGAAAACGTTTGCAA
Locus tag: LSL_1372
Name: spxB Funciton: Pyruvate oxidase (EC 1.2.3.3) |
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spxB
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Pyruvate oxidase (EC 1.2.3.3)
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Position: -181
Score: 4.2 Sequence: ATGTAAGCGTTATTCT
Locus tag: LSL_1881
Name: sufC Funciton: Iron-sulfur cluster assembly ATPase protein
Locus tag: LSL_1880
Name: sufD Funciton: Iron-sulfur cluster assembly protein
Locus tag: LSL_1879
Name: sufS Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: LSL_1878
Name: sufA Funciton: Fe-S cluster formation protein, NifU-like
Locus tag: LSL_1877
Name: sufB Funciton: Fe-S cluster assembly ABC-type transport system, permease component |
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sufC
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Iron-sulfur cluster assembly ATPase protein
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sufD
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Iron-sulfur cluster assembly protein
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sufS
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Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
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sufA
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Fe-S cluster formation protein, NifU-like
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sufB
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Fe-S cluster assembly ABC-type transport system, permease component
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Position: -56
Score: 4.2 Sequence: CAGTAAACGTTATCAT
Locus tag: LSL_1620
Name: mtlA Funciton: Mannitol-specific PTS system, IIBC component (EC 2.7.1.69)
Locus tag: LSL_1619
Name: mtlF Funciton: Mannitol-specific PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: LSL_1618
Name: mtlD Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) |
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mtlA
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Mannitol-specific PTS system, IIBC component (EC 2.7.1.69)
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mtlF
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Mannitol-specific PTS system, mannitol-specific IIA component (EC 2.7.1.69)
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mtlD
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Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
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Position: -73
Score: 4.6 Sequence: TTGAAAACGGTTAATA
Locus tag: LSL_1751
Name: rhaY Funciton: Predicted L-rhamnose permease RhaY
Locus tag: LSL_1752
Name: rhaB Funciton: Rhamnulokinase (EC 2.7.1.5)
Locus tag: LSL_1753
Name: rhaU Funciton: L-rhamnose 1-epimerase (EC 5.1.3.-)
Locus tag: LSL_1754
Name: rhaA Funciton: L-rhamnose isomerase (EC 5.3.1.14)
Locus tag: LSL_1755
Name: rhaD Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
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rhaY
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Predicted L-rhamnose permease RhaY
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rhaB
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Rhamnulokinase (EC 2.7.1.5)
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rhaU
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L-rhamnose 1-epimerase (EC 5.1.3.-)
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rhaA
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L-rhamnose isomerase (EC 5.3.1.14)
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rhaD
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Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
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Position: -39
Score: 4.2 Sequence: TTGAAAGTGTATACAT
Locus tag: LSL_1613
Name: pmi Funciton: Mannose-6-phosphate isomerase (EC 5.3.1.8) |
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pmi
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Mannose-6-phosphate isomerase (EC 5.3.1.8)
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Position: -96
Score: 4.5 Sequence: TTGTAAACAATTTCAT
Position: -27
Score: 4.1 Sequence: AAGAAAAGGTTTTCAG
Locus tag: LSL_1512
Name: treP Funciton: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69) |
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treP
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Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
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Position: -130
Score: 4.2 Sequence: ATGAAATTGTTTACAA
Locus tag: LSL_1513
Name: treR Funciton: Trehalose utilization transcriptional regulator TreR, GntR family
Locus tag: LSL_1514
Name: treA Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93) |
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treR
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Trehalose utilization transcriptional regulator TreR, GntR family
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treA
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Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
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Position: -46
Score: 4.4 Sequence: ATGAAAGCGTATTATA
Locus tag: LSL_0395
Name: pck Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
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pck
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Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
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Position: -69
Score: 4.5 Sequence: ATGAAAGCGAATTTAA
Locus tag: LSL_1117
Name: lulA Funciton: Lactate utilization protein A
Locus tag: LSL_1116
Name: lulC Funciton: Lactate utilization protein C
Locus tag: LSL_1115
Name: lulB Funciton: Lactate utilization protein B |
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lulA
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Lactate utilization protein A
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lulC
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Lactate utilization protein C
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lulB
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Lactate utilization protein B
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Position: -31
Score: 4.4 Sequence: TTGTAAACGATGTCAA
Locus tag: LSL_1748
Name: adhX Funciton: Zn conatining alcohol dehydrogenase |
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adhX
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Zn conatining alcohol dehydrogenase
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Position: -37
Score: 4.3 Sequence: ATGTAAGCGTACTCAA
Locus tag: LSL_1298
Name: gabD Funciton: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
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gabD
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Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
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Position: -125
Score: 4 Sequence: TTGCAAGCGTTTCATA
Locus tag: LSL_0419
Name: pepQ Funciton: Xaa-Pro dipeptidase (EC 3.4.13.9) |
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pepQ
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Xaa-Pro dipeptidase (EC 3.4.13.9)
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Position: -91
Score: 4.1 Sequence: TTGTTATCGTTTGCAT
Position: -68
Score: 4.2 Sequence: ATGTAAACGTGTTCTT
Locus tag: LSL_0388
Name: ptsH Funciton: Phosphotransferase system, HPr-related protein
Locus tag: LSL_0389
Name: ptsI Funciton: Phosphoenolpyruvate-protein kinase, PTS system component (EC 2.7.3.9) |
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ptsH
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Phosphotransferase system, HPr-related protein
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ptsI
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Phosphoenolpyruvate-protein kinase, PTS system component (EC 2.7.3.9)
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Position: -121
Score: 4.1 Sequence: ATTTAACCGCTTTTTT
Position: -33
Score: 4.5 Sequence: AAGAATACGTTTACAA
Locus tag: LSL_0065
Name: scrB Funciton: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
Locus tag: LSL_0064
Name: scrR Funciton: Sucrose operon repressor ScrR, LacI family |
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scrB
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Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
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scrR
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Sucrose operon repressor ScrR, LacI family
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Position: -216
Score: 4 Sequence: GTGATAACGATAACAA
Position: -67
Score: 4.5 Sequence: TTGTAAGCGTTATATA
Locus tag: LSL_0153
Name: pdhA Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Locus tag: LSL_0154
Name: pdhB Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
Locus tag: LSL_0155
Name: pdhC Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
Locus tag: LSL_0156
Name: pdhD Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
Locus tag: LSL_0157
Name: lplA1 Funciton: Lipoate-protein ligase A |
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pdhA
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
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pdhB
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
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pdhC
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
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pdhD
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
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lplA1
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Lipoate-protein ligase A
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Position: -52
Score: 4.2 Sequence: CATTAAGCGTTTTCAA
Locus tag: LSL_0066
Name: scrA Funciton: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69) |
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scrA
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Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
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Position: -150
Score: 4.9 Sequence: TTTAAAACGTTTTCAT
Position: -43
Score: 4.5 Sequence: GTGAAAACGATTACTA
Locus tag: LSL_0134
Name: ydgI Funciton: Putative NAD(P)H nitroreductase |
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ydgI
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Putative NAD(P)H nitroreductase
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Position: -32
Score: 4.5 Sequence: ATGTAAGCATTTTCTT
Locus tag: LSL_0376
Name: lacLM Funciton: Beta-galactosidase large subunit (EC 3.2.1.23) / Beta-galactosidase small subunit (EC 3.2.1.23) |
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lacLM
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Beta-galactosidase large subunit (EC 3.2.1.23) / Beta-galactosidase small subunit (EC 3.2.1.23)
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Position: -63
Score: 4.3 Sequence: TTGTAACCGTTAACAC
Locus tag: LSL_1894
Name: sorD Funciton: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
Locus tag: LSL_1893
Name: srlM Funciton: Sorbitol operon transcription regulator
Locus tag: LSL_1892
Name: srlR Funciton: Glucitol operon activator protein
Locus tag: LSL_1891
Name: srlA Funciton: Glucitol/sorbitol-specific PTS system, IIC component (EC 2.7.1.69)
Locus tag: LSL_1890
Name: srlE Funciton: Glucitol/sorbitol-specific PTS system, IIBC components (EC 2.7.1.69)
Locus tag: LSL_1889
Name: srlB Funciton: Glucitol/sorbitol-specific PTS system, IIA component (EC 2.7.1.69) |
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sorD
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Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
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srlM
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Sorbitol operon transcription regulator
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srlR
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Glucitol operon activator protein
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srlA
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Glucitol/sorbitol-specific PTS system, IIC component (EC 2.7.1.69)
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srlE
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Glucitol/sorbitol-specific PTS system, IIBC components (EC 2.7.1.69)
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srlB
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Glucitol/sorbitol-specific PTS system, IIA component (EC 2.7.1.69)
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Position: -200
Score: 4.3 Sequence: TTGACACCGCTTACAG
Locus tag: LSL_1300
Name: lp_0827 Funciton: Conserved hypothetical protein |
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lp_0827
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Conserved hypothetical protein
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Position: -59
Score: 4.5 Sequence: AAGAATGCGATTTCAT
Locus tag: LSL_1282
Name: malT Funciton: Predicted maltose/maltodextrin permease
Locus tag: LSL_1281
Name: galM Funciton: Aldose 1-epimerase
Locus tag: LSL_1280
Name: mapA Funciton: Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)
Locus tag: LSL_1279
Name: pgmB Funciton: Beta-phosphoglucomutase (EC 5.4.2.6) |
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malT
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Predicted maltose/maltodextrin permease
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galM
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Aldose 1-epimerase
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mapA
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Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)
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pgmB
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Beta-phosphoglucomutase (EC 5.4.2.6)
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Position: -140
Score: 4.3 Sequence: TAGTAATCGTTTTCAC
Position: -33
Score: 5 Sequence: ATGAAAACGTTTTAAA
Locus tag: LSL_0135
Name: adc Funciton: Probable acetoacetate decarboxylase
Locus tag: LSL_0136
Name: mmgB Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
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adc
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Probable acetoacetate decarboxylase
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mmgB
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3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
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Position: -56
Score: 3.8 Sequence: GTGAAAACGTTCTATA
Locus tag: LSL_0137
Name: hcaD Funciton: NADH peroxidase (EC 1.11.1.1) |
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hcaD
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NADH peroxidase (EC 1.11.1.1)
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Position: -64
Score: 5 Sequence: TTGAAAGCGTTTATAT
Locus tag: LSL_1633
Name: dhaK Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
Locus tag: LSL_1632
Name: dhaL Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL
Locus tag: LSL_1631
Name: dhaM Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM; DHA-specific IIA component
Locus tag: LSL_1630
Name: glpF2 Funciton: Glycerol uptake facilitator protein |
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dhaK
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Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
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dhaL
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Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL
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dhaM
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Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM; DHA-specific IIA component
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glpF2
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Glycerol uptake facilitator protein
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Position: -44
Score: 4.3 Sequence: AATAAAACGTTTTCTT
Locus tag: LSL_0381
Name: galK Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: LSL_0382
Name: galE Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
Locus tag: LSL_0383
Name: galT Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
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galK
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Galactokinase (EC 2.7.1.6)
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galE
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UDP-glucose 4-epimerase (EC 5.1.3.2)
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galT
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Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |