Regulon of CcpA in Lactobacillus casei ATCC 334
| Regulator type: | Transcription factor |
| TF locus tag: | LSEI_0809 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein; Fructose-1,6-bisphosphate |
| Regulog: | CcpA - Lactobacillaceae |
| Statistics of regulated genes: | |
| - Genes | 69 |
| - Operons | 31 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - CcpA
- By TF family - LacI
- By effector - HPr, phosphocarrier protein
- By effector - Fructose-1,6-bisphosphate
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -94
Score: 4 Sequence: AGTAAAACGCTTGCAT
Locus tag: LSEI_0809
Name: ccpA Funciton: Carbon catabolism global transcriptional regulator CcpA, LacI family |
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ccpA
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Carbon catabolism global transcriptional regulator CcpA, LacI family
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Position: -149
Score: 4 Sequence: GTTTAAGCGTTTTATA
Position: -92
Score: 4.4 Sequence: ATGAAAGGGCTTGCAT
Locus tag: LSEI_1784
Name: spxB Funciton: Pyruvate oxidase (EC 1.2.3.3) |
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spxB
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Pyruvate oxidase (EC 1.2.3.3)
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Position: -230
Score: 4.1 Sequence: TTGTAATCGCTGTTAA
Position: -208
Score: 4.4 Sequence: CAGTAAGCGGTTACAA
Locus tag: LSEI_2040
Name: glgB Funciton: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Locus tag: LSEI_2039
Name: glgC Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: LSEI_2038
Name: glgD Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: LSEI_2037
Name: glgA Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Locus tag: LSEI_2036
Name: glgP Funciton: Glycogen phosphorylase (EC 2.4.1.1)
Locus tag: LSEI_2035
Name: amy1 Funciton: Neopullulanase (EC 3.2.1.135) |
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glgB
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1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
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glgC
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Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
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glgD
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Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
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glgA
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Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
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glgP
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Glycogen phosphorylase (EC 2.4.1.1)
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amy1
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Neopullulanase (EC 3.2.1.135)
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Position: -51
Score: 4.7 Sequence: CTGGAAACGCTTTCAT
Locus tag: LSEI_0662
Name: glpK Funciton: Glycerol kinase (EC 2.7.1.30)
Locus tag: LSEI_0661
Name: glpD Funciton: Alpha-glycerophosphate oxidase (EC 1.1.3.21)
Locus tag: LSEI_0660
Name: glpF Funciton: Glycerol uptake facilitator protein |
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glpK
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Glycerol kinase (EC 2.7.1.30)
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glpD
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Alpha-glycerophosphate oxidase (EC 1.1.3.21)
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glpF
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Glycerol uptake facilitator protein
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Position: -88
Score: 4.5 Sequence: TTGACAGCGCTTCCAA
Locus tag: LSEI_0306
Name: rbsR Funciton: Ribose operon transcriptional regulator, LacI family
Locus tag: LSEI_0307
Name: rbsD Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: LSEI_0308
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: LSEI_0309
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: LSEI_0310
Name: null Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) |
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rbsR
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Ribose operon transcriptional regulator, LacI family
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rbsD
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Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
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rbsA
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Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
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rbsC
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Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
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Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
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Position: -108
Score: 4 Sequence: ATGAAAACGATGAAAA
Locus tag: LSEI_0748
Name: ndk Funciton: Nucleoside diphosphate kinase (EC 2.7.4.6) |
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ndk
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Nucleoside diphosphate kinase (EC 2.7.4.6)
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Position: -80
Score: 4.4 Sequence: TTGATAACGGTAACAA
Locus tag: LSEI_0980
Name: nplT Funciton: Neopullulanase (EC 3.2.1.135) |
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nplT
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Neopullulanase (EC 3.2.1.135)
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Position: -89
Score: 4.6 Sequence: TTGAAAACGCTTGTAA
Position: -39
Score: 4.3 Sequence: CAGAAAACGATTACAT
Locus tag: LSEI_2817
Name: pts20B Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Locus tag: LSEI_2818
Name: pts20A Funciton: PTS system, cellobiose-specific IIA component (EC 2.7.1.69) |
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pts20B
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PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
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pts20A
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PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
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Position: -65
Score: 4.5 Sequence: TTGTCAGCGATTACAT
Locus tag: LSEI_2888
Name: mtlA Funciton: Mannitol-specific PTS system, IIBC component (EC 2.7.1.69)
Locus tag: LSEI_2887
Name: mtlR Funciton: Mannitol operon antiterminator, BglG family
Locus tag: LSEI_2886
Name: mtlF Funciton: Mannitol-specific PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: LSEI_2885
Name: mtlD Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) |
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mtlA
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Mannitol-specific PTS system, IIBC component (EC 2.7.1.69)
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mtlR
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Mannitol operon antiterminator, BglG family
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mtlF
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Mannitol-specific PTS system, mannitol-specific IIA component (EC 2.7.1.69)
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mtlD
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Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
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Position: -90
Score: 4.8 Sequence: TTGAATGCGGTTACAA
Locus tag: LSEI_2769
Name: LBA0143 Funciton: Maltodextrin glucosidase (EC 3.2.1.20); Alpha-glucosidase, family 31 of glycosyl hydrolase |
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LBA0143
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Maltodextrin glucosidase (EC 3.2.1.20); Alpha-glucosidase, family 31 of glycosyl hydrolase
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Position: -101
Score: 4.1 Sequence: TCGAAATCGCTTTCTT
Locus tag: LSEI_1473
Name: lplA1 Funciton: Lipoate-protein ligase A |
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lplA1
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Lipoate-protein ligase A
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Position: -111
Score: 4.2 Sequence: AATAAAACGCTTGCAA
Position: -68
Score: 4.1 Sequence: TTGTAAAGATTTTCAT
Locus tag: LSEI_1305
Name: pdhA Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Locus tag: LSEI_1306
Name: pdhB Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
Locus tag: LSEI_1307
Name: pdhC Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
Locus tag: LSEI_1308
Name: pdhD Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component |
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pdhA
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
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pdhB
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
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pdhC
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
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pdhD
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
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Position: -90
Score: 4.2 Sequence: TTAAAAGCGTTTAAAC
Position: -27
Score: 4.3 Sequence: GTGAAAGCGATTTCTG
Locus tag: LSEI_0629
Name: treR Funciton: Trehalose utilization transcriptional regulator TreR, GntR family
Locus tag: LSEI_0630
Name: treA Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Locus tag: LSEI_0631
Name: treP Funciton: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69) |
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treR
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Trehalose utilization transcriptional regulator TreR, GntR family
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treA
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Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
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treP
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Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
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Position: -200
Score: 4.5 Sequence: TTGTAAGCGTTAACCT
Locus tag: LSEI_0559
Name: fmpA Funciton: Predicted mannose specific PTS system, IIA component
Locus tag: LSEI_0560
Name: fmpB Funciton: Predicted mannose specific PTS system, IIB component
Locus tag: LSEI_0561
Name: fmpC Funciton: Predicted mannose specific PTS system, IIC component
Locus tag: LSEI_0562
Name: fmpD Funciton: Predicted mannose specific PTS system,
Locus tag: LSEI_0563
Name: fmpE Funciton: Predicted mannose specific PTS system, putative EII component |
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fmpA
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Predicted mannose specific PTS system, IIA component
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fmpB
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Predicted mannose specific PTS system, IIB component
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fmpC
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Predicted mannose specific PTS system, IIC component
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fmpD
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Predicted mannose specific PTS system,
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fmpE
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Predicted mannose specific PTS system, putative EII component
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Position: -115
Score: 4.5 Sequence: GAGAAAGCGCTTATAA
Locus tag: LSEI_2296
Name: cad Funciton: Predicted pheromone precursor lipoprotein, related to Cad |
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cad
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Predicted pheromone precursor lipoprotein, related to Cad
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Position: -105
Score: 4.9 Sequence: TTGAAACCGCTTGCAT
Locus tag: LSEI_0369
Name: simA Funciton: Maltose-6'-phosphate glucosidase (EC 3.2.1.122) |
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simA
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Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
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Position: -79
Score: 4.6 Sequence: TTATAAACGCTTTCAG
Position: -30
Score: 4.5 Sequence: TTGGAATCGTTTTAAT
Locus tag: LSEI_2070
Name: lulA Funciton: Lactate utilization protein A
Locus tag: LSEI_2069
Name: lulC Funciton: Lactate utilization protein C
Locus tag: LSEI_2068
Name: lulB Funciton: Lactate utilization protein B |
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lulA
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Lactate utilization protein A
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lulC
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Lactate utilization protein C
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lulB
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Lactate utilization protein B
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Position: -18
Score: 4.1 Sequence: AAGGGAGCGTTTTCAA
Locus tag: LSEI_2278
Name: gabD Funciton: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
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gabD
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Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
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Position: -229
Score: 4.2 Sequence: ATGCAAGCGTTTTACT
Locus tag: LSEI_0808
Name: pepQ Funciton: Xaa-Pro dipeptidase (EC 3.4.13.9) |
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pepQ
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Xaa-Pro dipeptidase (EC 3.4.13.9)
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Position: -127
Score: 4.5 Sequence: ATGATAGCGGTAACAT
Locus tag: LSEI_0982
Name: mapA Funciton: Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)
Locus tag: LSEI_0983
Name: pgmB Funciton: Beta-phosphoglucomutase (EC 5.4.2.6) |
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mapA
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Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)
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pgmB
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Beta-phosphoglucomutase (EC 5.4.2.6)
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Position: -81
Score: 4.3 Sequence: CTGAAACCGTATACAA
Position: -14
Score: 4.1 Sequence: AAGGAAGCTGTTTCAT
Locus tag: LSEI_2045
Name: fbp Funciton: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11) |
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fbp
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Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)
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Position: -193
Score: 4 Sequence: CTGGAAACGCTTACGT
Locus tag: LSEI_2549
Name: ldh Funciton: L-lactate dehydrogenase (EC 1.1.1.27) |
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ldh
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L-lactate dehydrogenase (EC 1.1.1.27)
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Position: -43
Score: 4.9 Sequence: TTGTAAGCGATTTCTT
Locus tag: LSEI_0229
Name: gntP Funciton: H+/gluconate symporter related permease |
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gntP
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H+/gluconate symporter related permease
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Position: -98
Score: 4.7 Sequence: TTGAAAGCGCTATCGT
Locus tag: LSEI_0715
Name: yxjF Funciton: Predicted short-chain alcohol dehydrogenase
Locus tag: LSEI_0716
Name: adc Funciton: Probable acetoacetate decarboxylase
Locus tag: LSEI_0717
Name: ydgI Funciton: Putative NAD(P)H nitroreductase |
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yxjF
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Predicted short-chain alcohol dehydrogenase
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adc
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Probable acetoacetate decarboxylase
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ydgI
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Putative NAD(P)H nitroreductase
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Position: -36
Score: 4.5 Sequence: TTGAATGCGTTTTCGT
Locus tag: LSEI_2598
Name: lacX Funciton: Aldose 1-epimerase |
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lacX
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Aldose 1-epimerase
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Position: -102
Score: 3.9 Sequence: TTGAGCGCGTTTTCAA
Locus tag: LSEI_0949
Name: null Funciton: Phosphoglucosamine mutase (EC 5.4.2.10) / Phosphomannomutase (EC 5.4.2.8) |
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Phosphoglucosamine mutase (EC 5.4.2.10) / Phosphomannomutase (EC 5.4.2.8)
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Position: -69
Score: 4.2 Sequence: TTGTAAGCGTATCCAG
Locus tag: LSEI_2739
Name: ulaG Funciton: Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G)
Locus tag: LSEI_2738
Name: ulaC Funciton: Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-)
Locus tag: LSEI_2737
Name: ulaA Funciton: Ascorbate-specific PTS system, EIIC component
Locus tag: LSEI_2736
Name: ulaB Funciton: Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)
Locus tag: LSEI_2735
Name: ulaD Funciton: 3-keto-L-gulonate 6-phosphate decarboxylase (EC 4.1.1.85) |
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ulaG
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Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G)
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ulaC
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Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-)
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ulaA
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Ascorbate-specific PTS system, EIIC component
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ulaB
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Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)
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ulaD
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3-keto-L-gulonate 6-phosphate decarboxylase (EC 4.1.1.85)
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Position: -65
Score: 4.7 Sequence: ATAAAAACGGTTACAA
Locus tag: LSEI_0664
Name: galK Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: LSEI_0665
Name: galE Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
Locus tag: LSEI_0666
Name: galT Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
Locus tag: LSEI_0667
Name: galR Funciton: Galactose utilization transcriptional regulator GalR, LacI family
Locus tag: LSEI_0668
Name: galM Funciton: Aldose 1-epimerase (EC 5.1.3.3) |
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galK
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Galactokinase (EC 2.7.1.6)
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galE
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UDP-glucose 4-epimerase (EC 5.1.3.2)
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galT
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Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
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galR
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Galactose utilization transcriptional regulator GalR, LacI family
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galM
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Aldose 1-epimerase (EC 5.1.3.3)
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Position: -140
Score: 4.5 Sequence: ATGAAATCGGATACAT
Locus tag: LSEI_0634
Name: null Funciton: L-lactate dehydrogenase (EC 1.1.1.27) |
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L-lactate dehydrogenase (EC 1.1.1.27)
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Position: -62
Score: 4 Sequence: ATGAAACCACTCTCAT
Locus tag: LSEI_1126
Name: pgi Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
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pgi
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Glucose-6-phosphate isomerase (EC 5.3.1.9)
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Position: -304
Score: 4.1 Sequence: ATGTAACGGCTTATAT
Locus tag: LSEI_2729
Name: sorD Funciton: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
Locus tag: LSEI_2728
Name: srlM Funciton: Sorbitol operon transcription regulator |
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sorD
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Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
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srlM
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Sorbitol operon transcription regulator
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |