Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CcpA in Lactobacillus casei ATCC 334

Properties
Regulator type: Transcription factor
TF locus tag: LSEI_0809
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Regulog: CcpA - Lactobacillaceae
Statistics of regulated genes:
- Genes 69
- Operons 31
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 561 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -94
Score: 4
Sequence: AGTAAAACGCTTGCAT
Locus tag: LSEI_0809
Name: ccpA
Funciton: Carbon catabolism global transcriptional regulator CcpA, LacI family
LSEI_0809
ccpA
Carbon catabolism global transcriptional regulator CcpA, LacI family
Position: -149
Score: 4
Sequence: GTTTAAGCGTTTTATA
Position: -92
Score: 4.4
Sequence: ATGAAAGGGCTTGCAT
Locus tag: LSEI_1784
Name: spxB
Funciton: Pyruvate oxidase (EC 1.2.3.3)
LSEI_1784
spxB
Pyruvate oxidase (EC 1.2.3.3)
Position: -230
Score: 4.1
Sequence: TTGTAATCGCTGTTAA
Position: -208
Score: 4.4
Sequence: CAGTAAGCGGTTACAA
Locus tag: LSEI_2040
Name: glgB
Funciton: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Locus tag: LSEI_2039
Name: glgC
Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: LSEI_2038
Name: glgD
Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: LSEI_2037
Name: glgA
Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Locus tag: LSEI_2036
Name: glgP
Funciton: Glycogen phosphorylase (EC 2.4.1.1)
Locus tag: LSEI_2035
Name: amy1
Funciton: Neopullulanase (EC 3.2.1.135)
LSEI_2040
glgB
1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
LSEI_2039
glgC
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
LSEI_2038
glgD
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
LSEI_2037
glgA
Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
LSEI_2036
glgP
Glycogen phosphorylase (EC 2.4.1.1)
LSEI_2035
amy1
Neopullulanase (EC 3.2.1.135)
Position: -51
Score: 4.7
Sequence: CTGGAAACGCTTTCAT
Locus tag: LSEI_0662
Name: glpK
Funciton: Glycerol kinase (EC 2.7.1.30)
Locus tag: LSEI_0661
Name: glpD
Funciton: Alpha-glycerophosphate oxidase (EC 1.1.3.21)
Locus tag: LSEI_0660
Name: glpF
Funciton: Glycerol uptake facilitator protein
LSEI_0662
glpK
Glycerol kinase (EC 2.7.1.30)
LSEI_0661
glpD
Alpha-glycerophosphate oxidase (EC 1.1.3.21)
LSEI_0660
glpF
Glycerol uptake facilitator protein
Position: -88
Score: 4.5
Sequence: TTGACAGCGCTTCCAA
Locus tag: LSEI_0306
Name: rbsR
Funciton: Ribose operon transcriptional regulator, LacI family
Locus tag: LSEI_0307
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: LSEI_0308
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: LSEI_0309
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: LSEI_0310
Name: null
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
LSEI_0306
rbsR
Ribose operon transcriptional regulator, LacI family
LSEI_0307
rbsD
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
LSEI_0308
rbsA
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
LSEI_0309
rbsC
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
LSEI_0310
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Position: -108
Score: 4
Sequence: ATGAAAACGATGAAAA
Locus tag: LSEI_0748
Name: ndk
Funciton: Nucleoside diphosphate kinase (EC 2.7.4.6)
LSEI_0748
ndk
Nucleoside diphosphate kinase (EC 2.7.4.6)
Position: -80
Score: 4.4
Sequence: TTGATAACGGTAACAA
Locus tag: LSEI_0980
Name: nplT
Funciton: Neopullulanase (EC 3.2.1.135)
LSEI_0980
nplT
Neopullulanase (EC 3.2.1.135)
Position: -89
Score: 4.6
Sequence: TTGAAAACGCTTGTAA
Position: -39
Score: 4.3
Sequence: CAGAAAACGATTACAT
Locus tag: LSEI_2817
Name: pts20B
Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Locus tag: LSEI_2818
Name: pts20A
Funciton: PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
LSEI_2817
pts20B
PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
LSEI_2818
pts20A
PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
Position: -65
Score: 4.5
Sequence: TTGTCAGCGATTACAT
Locus tag: LSEI_2888
Name: mtlA
Funciton: Mannitol-specific PTS system, IIBC component (EC 2.7.1.69)
Locus tag: LSEI_2887
Name: mtlR
Funciton: Mannitol operon antiterminator, BglG family
Locus tag: LSEI_2886
Name: mtlF
Funciton: Mannitol-specific PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: LSEI_2885
Name: mtlD
Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
LSEI_2888
mtlA
Mannitol-specific PTS system, IIBC component (EC 2.7.1.69)
LSEI_2887
mtlR
Mannitol operon antiterminator, BglG family
LSEI_2886
mtlF
Mannitol-specific PTS system, mannitol-specific IIA component (EC 2.7.1.69)
LSEI_2885
mtlD
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Position: -90
Score: 4.8
Sequence: TTGAATGCGGTTACAA
Locus tag: LSEI_2769
Name: LBA0143
Funciton: Maltodextrin glucosidase (EC 3.2.1.20); Alpha-glucosidase, family 31 of glycosyl hydrolase
LSEI_2769
LBA0143
Maltodextrin glucosidase (EC 3.2.1.20); Alpha-glucosidase, family 31 of glycosyl hydrolase
Position: -101
Score: 4.1
Sequence: TCGAAATCGCTTTCTT
Locus tag: LSEI_1473
Name: lplA1
Funciton: Lipoate-protein ligase A
LSEI_1473
lplA1
Lipoate-protein ligase A
Position: -111
Score: 4.2
Sequence: AATAAAACGCTTGCAA
Position: -68
Score: 4.1
Sequence: TTGTAAAGATTTTCAT
Locus tag: LSEI_1305
Name: pdhA
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Locus tag: LSEI_1306
Name: pdhB
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
Locus tag: LSEI_1307
Name: pdhC
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
Locus tag: LSEI_1308
Name: pdhD
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
LSEI_1305
pdhA
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
LSEI_1306
pdhB
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
LSEI_1307
pdhC
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
LSEI_1308
pdhD
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
Position: -90
Score: 4.2
Sequence: TTAAAAGCGTTTAAAC
Position: -27
Score: 4.3
Sequence: GTGAAAGCGATTTCTG
Locus tag: LSEI_0629
Name: treR
Funciton: Trehalose utilization transcriptional regulator TreR, GntR family
Locus tag: LSEI_0630
Name: treA
Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Locus tag: LSEI_0631
Name: treP
Funciton: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
LSEI_0629
treR
Trehalose utilization transcriptional regulator TreR, GntR family
LSEI_0630
treA
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
LSEI_0631
treP
Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
Position: -200
Score: 4.5
Sequence: TTGTAAGCGTTAACCT
Locus tag: LSEI_0559
Name: fmpA
Funciton: Predicted mannose specific PTS system, IIA component
Locus tag: LSEI_0560
Name: fmpB
Funciton: Predicted mannose specific PTS system, IIB component
Locus tag: LSEI_0561
Name: fmpC
Funciton: Predicted mannose specific PTS system, IIC component
Locus tag: LSEI_0562
Name: fmpD
Funciton: Predicted mannose specific PTS system,
Locus tag: LSEI_0563
Name: fmpE
Funciton: Predicted mannose specific PTS system, putative EII component
LSEI_0559
fmpA
Predicted mannose specific PTS system, IIA component
LSEI_0560
fmpB
Predicted mannose specific PTS system, IIB component
LSEI_0561
fmpC
Predicted mannose specific PTS system, IIC component
LSEI_0562
fmpD
Predicted mannose specific PTS system,
LSEI_0563
fmpE
Predicted mannose specific PTS system, putative EII component
Position: -115
Score: 4.5
Sequence: GAGAAAGCGCTTATAA
Locus tag: LSEI_2296
Name: cad
Funciton: Predicted pheromone precursor lipoprotein, related to Cad
LSEI_2296
cad
Predicted pheromone precursor lipoprotein, related to Cad
Position: -105
Score: 4.9
Sequence: TTGAAACCGCTTGCAT
Locus tag: LSEI_0369
Name: simA
Funciton: Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
LSEI_0369
simA
Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
Position: -79
Score: 4.6
Sequence: TTATAAACGCTTTCAG
Position: -30
Score: 4.5
Sequence: TTGGAATCGTTTTAAT
Locus tag: LSEI_2070
Name: lulA
Funciton: Lactate utilization protein A
Locus tag: LSEI_2069
Name: lulC
Funciton: Lactate utilization protein C
Locus tag: LSEI_2068
Name: lulB
Funciton: Lactate utilization protein B
LSEI_2070
lulA
Lactate utilization protein A
LSEI_2069
lulC
Lactate utilization protein C
LSEI_2068
lulB
Lactate utilization protein B
Position: -18
Score: 4.1
Sequence: AAGGGAGCGTTTTCAA
Locus tag: LSEI_2278
Name: gabD
Funciton: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
LSEI_2278
gabD
Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Position: -229
Score: 4.2
Sequence: ATGCAAGCGTTTTACT
Locus tag: LSEI_0808
Name: pepQ
Funciton: Xaa-Pro dipeptidase (EC 3.4.13.9)
LSEI_0808
pepQ
Xaa-Pro dipeptidase (EC 3.4.13.9)
Position: -127
Score: 4.5
Sequence: ATGATAGCGGTAACAT
Locus tag: LSEI_0982
Name: mapA
Funciton: Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)
Locus tag: LSEI_0983
Name: pgmB
Funciton: Beta-phosphoglucomutase (EC 5.4.2.6)
LSEI_0982
mapA
Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)
LSEI_0983
pgmB
Beta-phosphoglucomutase (EC 5.4.2.6)
Position: -81
Score: 4.3
Sequence: CTGAAACCGTATACAA
Position: -14
Score: 4.1
Sequence: AAGGAAGCTGTTTCAT
Locus tag: LSEI_2045
Name: fbp
Funciton: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)
LSEI_2045
fbp
Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)
Position: -193
Score: 4
Sequence: CTGGAAACGCTTACGT
Locus tag: LSEI_2549
Name: ldh
Funciton: L-lactate dehydrogenase (EC 1.1.1.27)
LSEI_2549
ldh
L-lactate dehydrogenase (EC 1.1.1.27)
Position: -43
Score: 4.9
Sequence: TTGTAAGCGATTTCTT
Locus tag: LSEI_0229
Name: gntP
Funciton: H+/gluconate symporter related permease
LSEI_0229
gntP
H+/gluconate symporter related permease
Position: -98
Score: 4.7
Sequence: TTGAAAGCGCTATCGT
Locus tag: LSEI_0715
Name: yxjF
Funciton: Predicted short-chain alcohol dehydrogenase
Locus tag: LSEI_0716
Name: adc
Funciton: Probable acetoacetate decarboxylase
Locus tag: LSEI_0717
Name: ydgI
Funciton: Putative NAD(P)H nitroreductase
LSEI_0715
yxjF
Predicted short-chain alcohol dehydrogenase
LSEI_0716
adc
Probable acetoacetate decarboxylase
LSEI_0717
ydgI
Putative NAD(P)H nitroreductase
Position: -36
Score: 4.5
Sequence: TTGAATGCGTTTTCGT
Locus tag: LSEI_2598
Name: lacX
Funciton: Aldose 1-epimerase
LSEI_2598
lacX
Aldose 1-epimerase
Position: -102
Score: 3.9
Sequence: TTGAGCGCGTTTTCAA
Locus tag: LSEI_0949
Name: null
Funciton: Phosphoglucosamine mutase (EC 5.4.2.10) / Phosphomannomutase (EC 5.4.2.8)
LSEI_0949
Phosphoglucosamine mutase (EC 5.4.2.10) / Phosphomannomutase (EC 5.4.2.8)
Position: -69
Score: 4.2
Sequence: TTGTAAGCGTATCCAG
Locus tag: LSEI_2739
Name: ulaG
Funciton: Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G)
Locus tag: LSEI_2738
Name: ulaC
Funciton: Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-)
Locus tag: LSEI_2737
Name: ulaA
Funciton: Ascorbate-specific PTS system, EIIC component
Locus tag: LSEI_2736
Name: ulaB
Funciton: Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)
Locus tag: LSEI_2735
Name: ulaD
Funciton: 3-keto-L-gulonate 6-phosphate decarboxylase (EC 4.1.1.85)
LSEI_2739
ulaG
Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G)
LSEI_2738
ulaC
Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-)
LSEI_2737
ulaA
Ascorbate-specific PTS system, EIIC component
LSEI_2736
ulaB
Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)
LSEI_2735
ulaD
3-keto-L-gulonate 6-phosphate decarboxylase (EC 4.1.1.85)
Position: -65
Score: 4.7
Sequence: ATAAAAACGGTTACAA
Locus tag: LSEI_0664
Name: galK
Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: LSEI_0665
Name: galE
Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
Locus tag: LSEI_0666
Name: galT
Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
Locus tag: LSEI_0667
Name: galR
Funciton: Galactose utilization transcriptional regulator GalR, LacI family
Locus tag: LSEI_0668
Name: galM
Funciton: Aldose 1-epimerase (EC 5.1.3.3)
LSEI_0664
galK
Galactokinase (EC 2.7.1.6)
LSEI_0665
galE
UDP-glucose 4-epimerase (EC 5.1.3.2)
LSEI_0666
galT
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
LSEI_0667
galR
Galactose utilization transcriptional regulator GalR, LacI family
LSEI_0668
galM
Aldose 1-epimerase (EC 5.1.3.3)
Position: -140
Score: 4.5
Sequence: ATGAAATCGGATACAT
Locus tag: LSEI_0634
Name: null
Funciton: L-lactate dehydrogenase (EC 1.1.1.27)
LSEI_0634
L-lactate dehydrogenase (EC 1.1.1.27)
Position: -62
Score: 4
Sequence: ATGAAACCACTCTCAT
Locus tag: LSEI_1126
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
LSEI_1126
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -304
Score: 4.1
Sequence: ATGTAACGGCTTATAT
Locus tag: LSEI_2729
Name: sorD
Funciton: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
Locus tag: LSEI_2728
Name: srlM
Funciton: Sorbitol operon transcription regulator
LSEI_2729
sorD
Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
LSEI_2728
srlM
Sorbitol operon transcription regulator
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise