Regulon of TPP in Lactobacillus fermentum IFO 3956

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Regulog:	TPP - Lactobacillaceae
Under regulation:
- Genes	8
- Operons	3

Member of regulog collections

By taxonomy - Lactobacillaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -300 Score: 74.3 Sequence: CAGAATCTGTCTGGG... Locus tag: LAF_1533 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: LAF_1532 Name: thiW Funciton: Substrate-specific component ThiW of predicted thiazole ECF transporter
	LAF_1533	ykoE	Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
	LAF_1532	thiW	Substrate-specific component ThiW of predicted thiazole ECF transporter
Position: -168 Score: 57.7 Sequence: TATCTTGTCTGGGGT... Locus tag: LAF_1705 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: LAF_1706 Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: LAF_1707 Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
	LAF_1705	ykoE	Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
	LAF_1706	ykoD	Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
	LAF_1707	ykoC	Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Position: -282 Score: 62 Sequence: TAATAGTTGCTAGGG... Locus tag: LAF_0803 Name: thiM Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50) Locus tag: LAF_0802 Name: thiD Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7) Locus tag: LAF_0801 Name: thiE Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
	LAF_0803	thiM	Hydroxyethylthiazole kinase (EC 2.7.1.50)
	LAF_0802	thiD	Phosphomethylpyrimidine kinase (EC 2.7.4.7)
	LAF_0801	thiE	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD