Regulon of LexA in Pseudoalteromonas tunicata D2

Properties
Regulator type:	Transcription factor
TF locus tag:	PTD2_16946
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Regulog:	LexA - Alteromonadales
Statistics of regulated genes:
- Genes	14
- Operons	11
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 111 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - LexA
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Regulated operons
	Locus Tag	Name	Function
Position: -43 Score: 6.2 Sequence: TACTGTATAAATTAACAGTT Position: -19 Score: 5.5 Sequence: AACTGGATGGATAAACAGTA Locus tag: PTD2_10739 Name: recN Funciton: DNA repair protein RecN
	PTD2_10739	recN	DNA repair protein RecN
Position: -45 Score: 5.5 Sequence: AGCTGTATATAATCACAGTA Locus tag: PTD2_16946 Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
	PTD2_16946	lexA	SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -28 Score: 5.7 Sequence: CACTGTATAAACAACCAGTA Locus tag: PTD2_18455 Name: SSF52540 Funciton: hypothetical protein, P-loop containing nucleoside triphosphate hydrolase family
	PTD2_18455	SSF52540	hypothetical protein, P-loop containing nucleoside triphosphate hydrolase family
Position: -21 Score: 6 Sequence: TACTGTATATAACTACAGTA Locus tag: PTD2_17880 Name: umuD Funciton: DNA polymerase V, subunit UmuD Locus tag: PTD2_17875 Name: umuC Funciton: DNA polymerase V, subunit UmuC
	PTD2_17880	umuD	DNA polymerase V, subunit UmuD
	PTD2_17875	umuC	DNA polymerase V, subunit UmuC
Position: -52 Score: 6.1 Sequence: TACTGTATAAAAAAACAGTG Locus tag: PTD2_12644 Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7)
	PTD2_12644	dinB	DNA polymerase IV (EC 2.7.7.7)
Position: -84 Score: 5.4 Sequence: ACCTGTTCATAAAAACAGTA Locus tag: PTD2_09564 Name: uvrD Funciton: ATP-dependent DNA helicase II
	PTD2_09564	uvrD	ATP-dependent DNA helicase II
Position: -38 Score: 6 Sequence: CACTGTATATAAAAACAGTG Locus tag: PTD2_02786 Name: ATW7_03087 Funciton: Putative orphan protein
	PTD2_02786	ATW7_03087	Putative orphan protein
Position: -85 Score: 6.3 Sequence: TACTGTATATAAAAACAGTG Locus tag: PTD2_15577 Name: yebG Funciton: SOS regulon DNA damage-inducible protein
	PTD2_15577	yebG	SOS regulon DNA damage-inducible protein
Position: -33 Score: 5.2 Sequence: CACTGTTAATCTATACAGTT Locus tag: PTD2_09304 Name: topB Funciton: DNA topoisomerase III (EC 5.99.1.2)
	PTD2_09304	topB	DNA topoisomerase III (EC 5.99.1.2)
Position: -55 Score: 5.5 Sequence: TACTGTTAATCTATACAGTA Locus tag: PTD2_13014 Name: recA Funciton: Recombinase A
	PTD2_13014	recA	Recombinase A
Position: -66 Score: 5.2 Sequence: CACTGGTAATTTATACAGTT Locus tag: PTD2_22617 Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) Locus tag: PTD2_22612 Name: ruvA Funciton: Holliday junction DNA helicase RuvA Locus tag: PTD2_22607 Name: ruvB Funciton: Holliday junction DNA helicase RuvB
	PTD2_22617	ruvC	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
	PTD2_22612	ruvA	Holliday junction DNA helicase RuvA
	PTD2_22607	ruvB	Holliday junction DNA helicase RuvB

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LexA in Pseudoalteromonas tunicata D2

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --