Regulon of LexA in Pseudoalteromonas haloplanktis TAC125

Properties
Regulator type:	Transcription factor
TF locus tag:	PSHAa2873
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Regulog:	LexA - Alteromonadales
Statistics of regulated genes:
- Genes	15
- Operons	12
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 111 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - LexA
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Regulated operons
	Locus Tag	Name	Function
Position: -41 Score: 5.8 Sequence: TACTGTATACTTGTACAGTA Locus tag: PSHAb0537 Name: umuD Funciton: DNA polymerase V, subunit UmuD Locus tag: PSHAb0536 Name: umuC Funciton: DNA polymerase V, subunit UmuC
	PSHAb0537	umuD	DNA polymerase V, subunit UmuD
	PSHAb0536	umuC	DNA polymerase V, subunit UmuC
Position: -45 Score: 4.9 Sequence: TACTGTATATGGGTACTGTA Position: -32 Score: 5.6 Sequence: TACTGTATAAAAACCCAGTG Locus tag: PSHAa1159 Name: SSF52540 Funciton: hypothetical protein, P-loop containing nucleoside triphosphate hydrolase family
	PSHAa1159	SSF52540	hypothetical protein, P-loop containing nucleoside triphosphate hydrolase family
Position: -32 Score: 5.7 Sequence: GGCTGTATAAATAAACAGTT Locus tag: PSHAa2389 Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7)
	PSHAa2389	dinB	DNA polymerase IV (EC 2.7.7.7)
Position: -94 Score: 4.1 Sequence: AACTAGAGATATATAAAGTT Locus tag: PSHAa2356 Name: topB Funciton: DNA topoisomerase III (EC 5.99.1.2)
	PSHAa2356	topB	DNA topoisomerase III (EC 5.99.1.2)
Position: -116 Score: 5.7 Sequence: AACTGTATATACTCACAGTT Position: -91 Score: 5.5 Sequence: TACTGTATGGAAAACCAGTT Locus tag: PSHAa2873 Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
	PSHAa2873	lexA	SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -84 Score: 5.5 Sequence: AGCTGTGTATAAAAACAGTA Locus tag: PSHAa0122 Name: uvrD Funciton: ATP-dependent DNA helicase II
	PSHAa0122	uvrD	ATP-dependent DNA helicase II
Position: -49 Score: 6.3 Sequence: AACTGTATATATAAACAGTG Locus tag: PSHAb0389 Name: ATW7_03087 Funciton: Putative orphan protein
	PSHAb0389	ATW7_03087	Putative orphan protein
Position: 8 Score: 5.4 Sequence: TACTGTTTTTATATACAGCC Locus tag: PSHAa1996 Name: dnaQ Funciton: DNA polymerase III epsilon subunit (EC 2.7.7.7)
	PSHAa1996	dnaQ	DNA polymerase III epsilon subunit (EC 2.7.7.7)
Position: -70 Score: 6.1 Sequence: TACTGTACATAAAAACAGTA Locus tag: PSHAa0834 Name: yebG Funciton: SOS regulon DNA damage-inducible protein
	PSHAa0834	yebG	SOS regulon DNA damage-inducible protein
Position: -43 Score: 6 Sequence: CACTGTATAAATTAACAGTT Position: -19 Score: 5.3 Sequence: GACTGGATGGATAAACAGTA Locus tag: PSHAa1218 Name: recN Funciton: DNA repair protein RecN
	PSHAa1218	recN	DNA repair protein RecN
Position: -53 Score: 5.2 Sequence: TACTGTGATTTCATACAGTA Locus tag: PSHAa0694 Name: recA Funciton: Recombinase A
	PSHAa0694	recA	Recombinase A
Position: -69 Score: 5.3 Sequence: TACTGGTAATTTATACAGTG Locus tag: PSHAa1877 Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) Locus tag: PSHAa1876 Name: ruvA Funciton: Holliday junction DNA helicase RuvA Locus tag: PSHAa1875 Name: ruvB Funciton: Holliday junction DNA helicase RuvB
	PSHAa1877	ruvC	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
	PSHAa1876	ruvA	Holliday junction DNA helicase RuvA
	PSHAa1875	ruvB	Holliday junction DNA helicase RuvB

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LexA in Pseudoalteromonas haloplanktis TAC125

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --