Regulon of LexA in Pseudoalteromonas haloplanktis TAC125
| Regulator type: | Transcription factor |
| TF locus tag: | PSHAa2873 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 15 |
| - Operons | 12 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -41
Score: 5.8 Sequence: TACTGTATACTTGTACAGTA
Locus tag: PSHAb0537
Name: umuD Funciton: DNA polymerase V, subunit UmuD
Locus tag: PSHAb0536
Name: umuC Funciton: DNA polymerase V, subunit UmuC |
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umuD
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DNA polymerase V, subunit UmuD
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umuC
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DNA polymerase V, subunit UmuC
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Position: -45
Score: 4.9 Sequence: TACTGTATATGGGTACTGTA
Position: -32
Score: 5.6 Sequence: TACTGTATAAAAACCCAGTG
Locus tag: PSHAa1159
Name: SSF52540 Funciton: hypothetical protein, P-loop containing nucleoside triphosphate hydrolase family |
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SSF52540
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hypothetical protein, P-loop containing nucleoside triphosphate hydrolase family
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Position: -32
Score: 5.7 Sequence: GGCTGTATAAATAAACAGTT
Locus tag: PSHAa2389
Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7) |
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dinB
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DNA polymerase IV (EC 2.7.7.7)
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Position: -94
Score: 4.1 Sequence: AACTAGAGATATATAAAGTT
Locus tag: PSHAa2356
Name: topB Funciton: DNA topoisomerase III (EC 5.99.1.2) |
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topB
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DNA topoisomerase III (EC 5.99.1.2)
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Position: -116
Score: 5.7 Sequence: AACTGTATATACTCACAGTT
Position: -91
Score: 5.5 Sequence: TACTGTATGGAAAACCAGTT
Locus tag: PSHAa2873
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -84
Score: 5.5 Sequence: AGCTGTGTATAAAAACAGTA
Locus tag: PSHAa0122
Name: uvrD Funciton: ATP-dependent DNA helicase II |
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uvrD
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ATP-dependent DNA helicase II
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Position: -49
Score: 6.3 Sequence: AACTGTATATATAAACAGTG
Locus tag: PSHAb0389
Name: ATW7_03087 Funciton: Putative orphan protein |
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ATW7_03087
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Putative orphan protein
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Position: 8
Score: 5.4 Sequence: TACTGTTTTTATATACAGCC
Locus tag: PSHAa1996
Name: dnaQ Funciton: DNA polymerase III epsilon subunit (EC 2.7.7.7) |
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dnaQ
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DNA polymerase III epsilon subunit (EC 2.7.7.7)
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Position: -70
Score: 6.1 Sequence: TACTGTACATAAAAACAGTA
Locus tag: PSHAa0834
Name: yebG Funciton: SOS regulon DNA damage-inducible protein |
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yebG
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SOS regulon DNA damage-inducible protein
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Position: -43
Score: 6 Sequence: CACTGTATAAATTAACAGTT
Position: -19
Score: 5.3 Sequence: GACTGGATGGATAAACAGTA
Locus tag: PSHAa1218
Name: recN Funciton: DNA repair protein RecN |
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recN
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DNA repair protein RecN
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Position: -53
Score: 5.2 Sequence: TACTGTGATTTCATACAGTA
Locus tag: PSHAa0694
Name: recA Funciton: Recombinase A |
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recA
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Recombinase A
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Position: -69
Score: 5.3 Sequence: TACTGGTAATTTATACAGTG
Locus tag: PSHAa1877
Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: PSHAa1876
Name: ruvA Funciton: Holliday junction DNA helicase RuvA
Locus tag: PSHAa1875
Name: ruvB Funciton: Holliday junction DNA helicase RuvB |
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ruvC
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Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
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ruvA
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Holliday junction DNA helicase RuvA
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ruvB
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Holliday junction DNA helicase RuvB
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |