Regulon of Fur in Pseudoalteromonas haloplanktis TAC125
| Regulator type: | Transcription factor |
| TF locus tag: | PSHAa1641 |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Regulog: | Fur - Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 23 |
| - Operons | 15 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - FUR
- By TF family - FUR
- By effector - Iron ion, (Fe2+)
- By pathway - Iron homeostasis
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -65
Score: 5.6 Sequence: AATTGCAAATCAATATCATTT
Locus tag: PSHAa0695
Name: fhuE Funciton: TonB-dependent siderophore receptor |
|||
|
fhuE
|
TonB-dependent siderophore receptor
|
||
|
Position: -78
Score: 4.7 Sequence: GAATAACATTGATTCTCATTC
Locus tag: PSHAa2478
Name: fecA Funciton: TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins |
|||
|
fecA
|
TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins
|
||
|
Position: -55
Score: 5.2 Sequence: TAACGATAACCATTATCATTC
Position: -22
Score: 4.8 Sequence: AAATACGAATACTTACCATTA
Locus tag: PSHAb0512
Name: COG4774 Funciton: Outer membrane receptor for monomeric catechols, TonB-dependent |
|||
|
COG4774
|
Outer membrane receptor for monomeric catechols, TonB-dependent
|
||
|
Position: -49
Score: 5.2 Sequence: TATTGTTAATAGTTATCATTA
Locus tag: PSHAb0286
Name: Patl_2402 Funciton: Ferric aerobactin receptor |
|||
|
Patl_2402
|
Ferric aerobactin receptor
|
||
|
Position: -149
Score: 5.1 Sequence: AATTGAAAACTGCTCTCATTA
Locus tag: PSHAb0287
Name: pepSY Funciton: Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB |
|||
|
pepSY
|
Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB
|
||
|
Position: -67
Score: 6.2 Sequence: AAATGATATTGATTATCATTT
Locus tag: PSHAa1629
Name: PF11449 Funciton: Predicted manganese transporter, 11 TMS |
|||
|
PF11449
|
Predicted manganese transporter, 11 TMS
|
||
|
Position: -147
Score: 5.6 Sequence: TAATGATAACTATTATCAAAT
Locus tag: PSHAa0048
Name: fumC Funciton: Fumarate hydratase class II (EC 4.2.1.2) |
|||
|
fumC
|
Fumarate hydratase class II (EC 4.2.1.2)
|
||
|
Position: -52
Score: 5.1 Sequence: AATTGATAATTGTTATCATGC
Locus tag: PSHAa2961
Name: pepSY Funciton: putative iron-regulated membrane protein |
|||
|
pepSY
|
putative iron-regulated membrane protein
|
||
|
Position: -32
Score: 5.3 Sequence: TATTGATAATAGTTATTATTC
Locus tag: PSHAa2663
Name: fbpA Funciton: Ferric iron ABC transporter, iron-binding protein
Locus tag: PSHAa2662
Name: fbpB Funciton: Ferric iron ABC transporter, permease protein
Locus tag: PSHAa2661
Name: fbpC Funciton: Ferric iron ABC transporter, ATP-binding protein
Locus tag: PSHAa2660
Name: yfeK Funciton: Predicted iron-dependent peroxidase, Dyp-type family |
|||
|
fbpA
|
Ferric iron ABC transporter, iron-binding protein
|
||
|
fbpB
|
Ferric iron ABC transporter, permease protein
|
||
|
fbpC
|
Ferric iron ABC transporter, ATP-binding protein
|
||
|
yfeK
|
Predicted iron-dependent peroxidase, Dyp-type family
|
||
|
Position: -56
Score: 4.9 Sequence: AAATGAGAGTGGTTAGCATTC
Locus tag: PSHAb0279
Name: Patl_1142 Funciton: TonB-dependent siderophore receptor |
|||
|
Patl_1142
|
TonB-dependent siderophore receptor
|
||
|
Position: -62
Score: 5.5 Sequence: AAATGATACTGGTTTTCATTA
Locus tag: PSHAa0108
Name: CPS_4959 Funciton: Ferrichrome-iron receptor |
|||
|
CPS_4959
|
Ferrichrome-iron receptor
|
||
|
Position: -37
Score: 5.6 Sequence: AAATAATAATAATTATTAATA
Position: -34
Score: 4.8 Sequence: TAATAATAATTATTAATAATA
Locus tag: PSHAa0951
Name: null Funciton: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) |
|||
|
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
|
|||
|
Position: -49
Score: 5 Sequence: TAATACAAATCATTATCATGT
Locus tag: PSHAa2970
Name: CPS_1855 Funciton: conserved protein of unknown function; putative membrane-associated protein
Locus tag: PSHAa2971
Name: CPS_1856 Funciton: putative exported protein
Locus tag: PSHAa2972
Name: ATW7_15889 Funciton: Uncharacterized metal-binding protein |
|||
|
CPS_1855
|
conserved protein of unknown function; putative membrane-associated protein
|
||
|
CPS_1856
|
putative exported protein
|
||
|
ATW7_15889
|
Uncharacterized metal-binding protein
|
||
|
Position: -47
Score: 5.9 Sequence: AAATGCTAATCATTATCAATT
Locus tag: PSHAb0251
Name: irgA Funciton: TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins |
|||
|
irgA
|
TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins
|
||
|
Position: -45
Score: 5.1 Sequence: ATATGATAATACCTATCATTT
Locus tag: PSHAa1611
Name: null Funciton: putative orphan protein
Locus tag: PSHAa1612
Name: fbpA Funciton: Ferric iron ABC transporter, iron-binding protein
Locus tag: PSHAa1613
Name: fbpB Funciton: Ferric iron ABC transporter, permease protein
Locus tag: PSHAa1614
Name: fbpC Funciton: Ferric iron ABC transporter, ATP-binding protein |
|||
|
putative orphan protein
|
|||
|
fbpA
|
Ferric iron ABC transporter, iron-binding protein
|
||
|
fbpB
|
Ferric iron ABC transporter, permease protein
|
||
|
fbpC
|
Ferric iron ABC transporter, ATP-binding protein
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |