Regulon of SiaR in Haemophilus somnus 2336
| Regulator type: | Transcription factor |
| TF locus tag: | HSM_1107 |
| Regulator family: | RpiR |
| Regulation mode: | repressor (activator) |
| Biological process: | Sialic acid utilization |
| Effector: | Glucosamine-6-phosphate |
| Regulog: | SiaR - Pasteurellales |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pasteurellales
- By trascription factor - SiaR
- By TF family - RpiR
- By effector - Glucosamine-6-phosphate
- By pathway - Sialic acid utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -56
Score: 5.2 Sequence: TCTGAAATAAAACTTCATT
Locus tag: HSM_1505
Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Locus tag: HSM_1504
Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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nagB
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Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
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nagA
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
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Position: -156
Score: 4.1 Sequence: TTTGGTGTTTTACTCCAGA
Position: -106
Score: 4.4 Sequence: TCTGAAATAAAACTCTATA
Locus tag: HSM_1112
Name: siaP Funciton: Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP)
Locus tag: HSM_1113
Name: siaT Funciton: TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter |
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siaP
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Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP)
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siaT
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TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter
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Position: -145
Score: 4.4 Sequence: TATAGAGTTTTATTTCAGA
Position: -95
Score: 4.1 Sequence: TCTGGAGTAAAACACCAAA
Locus tag: HSM_1111
Name: neuA Funciton: Putative N-acylneuraminate cytidylyltransferase (EC 2.7.7.43)
Locus tag: HSM_1110
Name: nanE Funciton: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
Locus tag: HSM_1109
Name: nanK Funciton: N-acetylmannosamine kinase (EC 2.7.1.60)
Locus tag: HSM_1108
Name: yhcH Funciton: Uncharacterized protein yhcH
Locus tag: HSM_1107
Name: siaR Funciton: Sialic acid utilization regulator, RpiR family
Locus tag: HSM_1106
Name: nanA Funciton: N-acetylneuraminate lyase (EC 4.1.3.3) |
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neuA
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Putative N-acylneuraminate cytidylyltransferase (EC 2.7.7.43)
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nanE
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N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
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nanK
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N-acetylmannosamine kinase (EC 2.7.1.60)
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yhcH
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Uncharacterized protein yhcH
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siaR
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Sialic acid utilization regulator, RpiR family
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nanA
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N-acetylneuraminate lyase (EC 4.1.3.3)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |