Regulon of IscR in Pseudoalteromonas tunicata D2

Properties
Regulator type:	Transcription factor
TF locus tag:	PTD2_13944
Regulator family:	Rrf2
Regulation mode:	activator (repressor)
Biological process:	Iron-sulfur cluster biogenesis
Effector:	Iron-sulfur cluster redox state
Regulog:	IscR - Alteromonadales
Statistics of regulated genes:
- Genes	11
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 43 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - IscR
By TF family - Rrf2
By effector - Iron-sulfur cluster redox state
By pathway - Iron-sulfur cluster biogenesis

Regulated operons
	Locus Tag	Name	Function
Position: -164 Score: 5 Sequence: AATCCCGAGTATTTTACTCAAGTTT Locus tag: PTD2_10759 Name: ydhD Funciton: Probable monothiol glutaredoxin ydhD
	PTD2_10759	ydhD	Probable monothiol glutaredoxin ydhD
Position: -149 Score: 7.4 Sequence: ATACTTGACTAAATTAGTCGGGTAT Position: -107 Score: 7.3 Sequence: ATACTTGACTAAATTAGTCGGGTAA Position: -66 Score: 6.4 Sequence: ATACTTGACTCTTTTAGTCAGGTTA Locus tag: PTD2_13944 Name: iscR Funciton: Iron-sulfur cluster regulator IscR Locus tag: PTD2_13939 Name: iscS Funciton: Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Locus tag: PTD2_13934 Name: iscU Funciton: Iron-sulfur cluster assembly scaffold protein IscU Locus tag: PTD2_13929 Name: iscA Funciton: Iron binding protein IscA for iron-sulfur cluster assembly Locus tag: PTD2_13924 Name: hscB Funciton: Chaperone protein HscB Locus tag: PTD2_13919 Name: hscA Funciton: Chaperone protein HscA Locus tag: PTD2_13914 Name: fdx Funciton: ferredoxin, 2Fe-2S type, ISC system
	PTD2_13944	iscR	Iron-sulfur cluster regulator IscR
	PTD2_13939	iscS	Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
	PTD2_13934	iscU	Iron-sulfur cluster assembly scaffold protein IscU
	PTD2_13929	iscA	Iron binding protein IscA for iron-sulfur cluster assembly
	PTD2_13924	hscB	Chaperone protein HscB
	PTD2_13919	hscA	Chaperone protein HscA
	PTD2_13914	fdx	ferredoxin, 2Fe-2S type, ISC system
Position: -62 Score: 6.6 Sequence: GTACTTGATTAAAACACTCGGGTAT Locus tag: PTD2_12764 Name: erpA Funciton: ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family
	PTD2_12764	erpA	ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family
Position: -35 Score: 6.1 Sequence: ATACCCGAGTATTTTAGTCAACTAT Locus tag: PTD2_16836 Name: nfuA Funciton: NfuA Fe-S protein maturation Locus tag: PTD2_16841 Name: CPS_0221 Funciton: Conserved hypothetical protein
	PTD2_16836	nfuA	NfuA Fe-S protein maturation
	PTD2_16841	CPS_0221	Conserved hypothetical protein

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD