Regulon of IscR in Pseudoalteromonas haloplanktis TAC125

Properties
Regulator type:	Transcription factor
TF locus tag:	PSHAa2672
Regulator family:	Rrf2
Regulation mode:	activator (repressor)
Biological process:	Iron-sulfur cluster biogenesis
Effector:	Iron-sulfur cluster redox state
Regulog:	IscR - Alteromonadales
Statistics of regulated genes:
- Genes	11
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 43 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - IscR
By TF family - Rrf2
By effector - Iron-sulfur cluster redox state
By pathway - Iron-sulfur cluster biogenesis

Regulated operons
	Locus Tag	Name	Function
Position: -163 Score: 5.3 Sequence: ATTGTTGAGTATTCTACTCAAGTTT Locus tag: PSHAa1216 Name: ydhD Funciton: Probable monothiol glutaredoxin ydhD
	PSHAa1216	ydhD	Probable monothiol glutaredoxin ydhD
Position: -157 Score: 7.3 Sequence: ATACTTGACTAAATTACTCAGGTAA Position: -117 Score: 7 Sequence: ATACTTGAGTAAAACACTCAGGTAT Position: -58 Score: 7 Sequence: ATACTTGACTAATTTACTCTGGTAA Locus tag: PSHAa2672 Name: iscR Funciton: Iron-sulfur cluster regulator IscR Locus tag: PSHAa2671 Name: iscS Funciton: Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Locus tag: PSHAa2670 Name: iscU Funciton: Iron-sulfur cluster assembly scaffold protein IscU Locus tag: PSHAa2669 Name: iscA Funciton: Iron binding protein IscA for iron-sulfur cluster assembly Locus tag: PSHAa2668 Name: hscB Funciton: Chaperone protein HscB Locus tag: PSHAa2667 Name: hscA Funciton: Chaperone protein HscA Locus tag: PSHAa2666 Name: fdx Funciton: ferredoxin, 2Fe-2S type, ISC system
	PSHAa2672	iscR	Iron-sulfur cluster regulator IscR
	PSHAa2671	iscS	Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
	PSHAa2670	iscU	Iron-sulfur cluster assembly scaffold protein IscU
	PSHAa2669	iscA	Iron binding protein IscA for iron-sulfur cluster assembly
	PSHAa2668	hscB	Chaperone protein HscB
	PSHAa2667	hscA	Chaperone protein HscA
	PSHAa2666	fdx	ferredoxin, 2Fe-2S type, ISC system
Position: -62 Score: 6.9 Sequence: ATACTTGATTAAAACACTCGGGTAT Locus tag: PSHAa2251 Name: erpA Funciton: ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family
	PSHAa2251	erpA	ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family
Position: -35 Score: 6 Sequence: GTATCCGAGTAATTTAGTCAAGTAT Locus tag: PSHAa2860 Name: nfuA Funciton: NfuA Fe-S protein maturation Locus tag: PSHAa2861 Name: CPS_0221 Funciton: Conserved hypothetical protein
	PSHAa2860	nfuA	NfuA Fe-S protein maturation
	PSHAa2861	CPS_0221	Conserved hypothetical protein

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD