Regulon of IscR in Pseudoalteromonas haloplanktis TAC125
| Regulator type: | Transcription factor |
| TF locus tag: | PSHAa2672 |
| Regulator family: | Rrf2 |
| Regulation mode: | activator (repressor) |
| Biological process: | Iron-sulfur cluster biogenesis |
| Effector: | Iron-sulfur cluster redox state |
| Regulog: | IscR - Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - IscR
- By TF family - Rrf2
- By effector - Iron-sulfur cluster redox state
- By pathway - Iron-sulfur cluster biogenesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -163
Score: 5.3 Sequence: ATTGTTGAGTATTCTACTCAAGTTT
Locus tag: PSHAa1216
Name: ydhD Funciton: Probable monothiol glutaredoxin ydhD |
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ydhD
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Probable monothiol glutaredoxin ydhD
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Position: -157
Score: 7.3 Sequence: ATACTTGACTAAATTACTCAGGTAA
Position: -117
Score: 7 Sequence: ATACTTGAGTAAAACACTCAGGTAT
Position: -58
Score: 7 Sequence: ATACTTGACTAATTTACTCTGGTAA
Locus tag: PSHAa2672
Name: iscR Funciton: Iron-sulfur cluster regulator IscR
Locus tag: PSHAa2671
Name: iscS Funciton: Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
Locus tag: PSHAa2670
Name: iscU Funciton: Iron-sulfur cluster assembly scaffold protein IscU
Locus tag: PSHAa2669
Name: iscA Funciton: Iron binding protein IscA for iron-sulfur cluster assembly
Locus tag: PSHAa2668
Name: hscB Funciton: Chaperone protein HscB
Locus tag: PSHAa2667
Name: hscA Funciton: Chaperone protein HscA
Locus tag: PSHAa2666
Name: fdx Funciton: ferredoxin, 2Fe-2S type, ISC system |
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iscR
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Iron-sulfur cluster regulator IscR
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iscS
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Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
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iscU
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Iron-sulfur cluster assembly scaffold protein IscU
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iscA
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Iron binding protein IscA for iron-sulfur cluster assembly
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hscB
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Chaperone protein HscB
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hscA
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Chaperone protein HscA
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fdx
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ferredoxin, 2Fe-2S type, ISC system
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Position: -62
Score: 6.9 Sequence: ATACTTGATTAAAACACTCGGGTAT
Locus tag: PSHAa2251
Name: erpA Funciton: ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family |
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erpA
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ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family
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Position: -35
Score: 6 Sequence: GTATCCGAGTAATTTAGTCAAGTAT
Locus tag: PSHAa2860
Name: nfuA Funciton: NfuA Fe-S protein maturation
Locus tag: PSHAa2861
Name: CPS_0221 Funciton: Conserved hypothetical protein |
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nfuA
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NfuA Fe-S protein maturation
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CPS_0221
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Conserved hypothetical protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |