Regulon of HypR in Pseudomonas aeruginosa PAO1
| Regulator type: | Transcription factor |
| TF locus tag: | PA1269 |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | Proline; 4-hydroxyproline |
| Regulog: | HypR - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - HypR
- By TF family - GntR/Others
- By effector - Proline
- By effector - 4-hydroxyproline
- By pathway - Proline and 4-hydrohyproline utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -61
Score: 4.5 Sequence: TTCGTATACAAT
Locus tag: PA1269
Name: hypR Funciton: Predicted regulator for proline and hydrohyproline utilization, GntR family
Locus tag: PA1268
Name: hypE Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: PA1267
Name: hypO Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
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hypR
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Predicted regulator for proline and hydrohyproline utilization, GntR family
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hypE
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Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
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hypO
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D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
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Position: -67
Score: 3.8 Sequence: ATCGTATACGAA
Locus tag: PA1260
Name: hypM Funciton: Predicted hydroxyproline ABC transporter, substrate-binding protein
Locus tag: PA1259
Name: hypX Funciton: Putative citrate/isocitrate isomerase or aconitase ## predicted from clustering to proline racemase
Locus tag: PA1258
Name: hypN Funciton: Predicted hydroxyproline ABC transporter, permease protein
Locus tag: PA1257
Name: hypP Funciton: Predicted hydroxyproline ABC transporter, permease protein
Locus tag: PA1256
Name: hypQ Funciton: Predicted hydroxyproline ABC transporter, ATP-binding protein
Locus tag: PA1255
Name: hypY Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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hypM
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Predicted hydroxyproline ABC transporter, substrate-binding protein
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hypX
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Putative citrate/isocitrate isomerase or aconitase ## predicted from clustering to proline racemase
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hypN
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Predicted hydroxyproline ABC transporter, permease protein
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hypP
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Predicted hydroxyproline ABC transporter, permease protein
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hypQ
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Predicted hydroxyproline ABC transporter, ATP-binding protein
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hypY
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Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
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Position: -32
Score: 3.7 Sequence: TTCGTATACGAA
Locus tag: PA1254
Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
Locus tag: PA1253
Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
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hypD
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1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
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hypH
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Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |