Statistics of regulated genes

Genome	Genes	Operons
Pseudomonas aeruginosa PAO1	11	3
Pseudomonas entomophila L48
Pseudomonas putida KT2440
Pseudomonas syringae pv. tomato str. DC3000
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp
Pseudomonas stutzeri A1501
Azotobacter vinelandii AvOP

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes									Function
CRON 1.
hypM	* Pseudomonas aeruginosa PAO1 Site: position = -67 score = 3.80123 sequence = ATCGTATACGAA Gene: PA1260: Predicted hydroxyproline ABC transporter, substrate-binding protein	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Predicted hydroxyproline ABC transporter, substrate-binding protein
hypX	Pseudomonas aeruginosa PAO1 Gene: PA1259: Putative citrate/isocitrate isomerase or aconitase ## predicted from clustering to proline racemase	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Putative citrate/isocitrate isomerase or aconitase ## predicted from clustering to proline racemase
hypN	Pseudomonas aeruginosa PAO1 Gene: PA1258: Predicted hydroxyproline ABC transporter, permease protein	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Predicted hydroxyproline ABC transporter, permease protein
hypP	Pseudomonas aeruginosa PAO1 Gene: PA1257: Predicted hydroxyproline ABC transporter, permease protein	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Predicted hydroxyproline ABC transporter, permease protein
hypQ	Pseudomonas aeruginosa PAO1 Gene: PA1256: Predicted hydroxyproline ABC transporter, ATP-binding protein	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Predicted hydroxyproline ABC transporter, ATP-binding protein
hypY	Pseudomonas aeruginosa PAO1 Gene: PA1255: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
CRON 2.
hypR	* Pseudomonas aeruginosa PAO1 Site: position = -61 score = 4.49449 sequence = TTCGTATACAAT Gene: PA1269: Predicted regulator for proline and hydrohyproline utilization, GntR family	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Predicted regulator for proline and hydrohyproline utilization, GntR family
hypE	Pseudomonas aeruginosa PAO1 Gene: PA1268: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)	Pseudomonas entomophila L48 Gene: PSEEN4050: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)	Pseudomonas putida KT2440 Gene: PP1258: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5 Gene: PFL_1412: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
hypO	Pseudomonas aeruginosa PAO1 Gene: PA1267: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
CRON 3.
hypD	* Pseudomonas aeruginosa PAO1 Site: position = -32 score = 3.66748 sequence = TTCGTATACGAA Gene: PA1254: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5 Gene: PFL_1413: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
hypH	Pseudomonas aeruginosa PAO1 Gene: PA1253: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible	Pseudomonas entomophila L48	Pseudomonas putida KT2440 Gene: PP2585: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5 Gene: PFL_1415: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible	Pseudomonas mendocina ymp Gene: Pmen_0227: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD