Regulon of Cobalamin in Fervidobacterium nodosum Rt17-B1
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Thermotogales |
| Under regulation: | |
| - Genes | 14 |
| - Operons | 3 |
Member of regulog collections
- By taxonomy - Thermotogales
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -261
Score: 122.2 Sequence: ATATTCCAAACTGCG...
Locus tag: Fnod_1378
Name: sucC Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: Fnod_1379
Name: sucD Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: Fnod_1380
Name: null Funciton: Predicted transmembrane protein |
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sucC
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Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
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sucD
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Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
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Predicted transmembrane protein
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Position: -265
Score: 99.6 Sequence: AAAAACAAACCGAAT...
Locus tag: Fnod_1365
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Fnod_1366
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Fnod_1367
Name: null Funciton: Putative xylose isomerase domain protein
Locus tag: Fnod_1368
Name: cobS Funciton: Cobalamin synthase
Locus tag: Fnod_1369
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Fnod_1370
Name: cbiB Funciton: Adenosylcobinamide-phosphate synthase
Locus tag: Fnod_1371
Name: cobD Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Locus tag: Fnod_1372
Name: Fnod_1372 Funciton: Putative ATP binding protein
Locus tag: Fnod_1373
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
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cobT
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Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
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cobU
|
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
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Putative xylose isomerase domain protein
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cobS
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Cobalamin synthase
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cbiP
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Cobyric acid synthase
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cbiB
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Adenosylcobinamide-phosphate synthase
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cobD
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L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
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Fnod_1372
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Putative ATP binding protein
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btuR
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Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
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Position: -231
Score: 96.8 Sequence: AATAAACCTCCCTTT...
Locus tag: Fnod_0257
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Fnod_0256
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC |
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btuF
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Vitamin B12 ABC transporter, B12-binding component BtuF
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |