Regulon of CcmR in Synechocystis sp. PCC 6803

Properties
Regulator type:	Transcription factor
TF locus tag:	sll0030, sll1594
Regulator family:	LysR
Regulation mode:	repressor
Biological process:	Carbon dioxide fixation
Effector:
Regulog:	CcmR - Cyanobacteria
Statistics of regulated genes:
- Genes	31
- Operons	8
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 72 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - LysR
By pathway - Carbon dioxide fixation

Regulated operons
	Locus Tag	Name	Function
Position: -125 Score: 3.8 Sequence: ATAGAATCTATGCAAT Locus tag: slr2006 Name: mnhC Funciton: Na/H antiporter, subunit C Locus tag: slr2007 Name: mnhD Funciton: Na/H antiporter, subunit D Locus tag: slr2008 Name: mnhC Funciton: Na/H antiporter, subunit C Locus tag: slr2009 Name: mnhD Funciton: Na/H antiporter, subunit D Locus tag: slr2010 Name: mnhE Funciton: Predicted Na/H antiporter, subunit E Locus tag: ssr3409 Name: mnhF Funciton: Na/H antiporter, subunit F Locus tag: ssr3410 Name: mnhG Funciton: Na/H antiporter, subunit G Locus tag: slr2011 Name: slr2011 Funciton: Predicted subunit of the Na/H antiporter Locus tag: slr2012 Name: mnhB Funciton: Na/H antiporter, subunit B
	slr2006	mnhC	Na/H antiporter, subunit C
	slr2007	mnhD	Na/H antiporter, subunit D
	slr2008	mnhC	Na/H antiporter, subunit C
	slr2009	mnhD	Na/H antiporter, subunit D
	slr2010	mnhE	Predicted Na/H antiporter, subunit E
	ssr3409	mnhF	Na/H antiporter, subunit F
	ssr3410	mnhG	Na/H antiporter, subunit G
	slr2011	slr2011	Predicted subunit of the Na/H antiporter
	slr2012	mnhB	Na/H antiporter, subunit B
Position: -76 Score: 4.4 Sequence: CTAGAATATTCTCTAT Position: -45 Score: 5.3 Sequence: ATAGACTAAAGACTAT Locus tag: sll0834 Name: bicA Funciton: Bicarbonate transporter
	sll0834	bicA	Bicarbonate transporter
Position: -107 Score: 4.3 Sequence: ATTGTGATTGGTCTAT Locus tag: slr2007 Name: mnhD Funciton: Na/H antiporter, subunit D Locus tag: slr2008 Name: mnhC Funciton: Na/H antiporter, subunit C Locus tag: slr2009 Name: mnhD Funciton: Na/H antiporter, subunit D Locus tag: slr2010 Name: mnhE Funciton: Predicted Na/H antiporter, subunit E Locus tag: ssr3409 Name: mnhF Funciton: Na/H antiporter, subunit F Locus tag: ssr3410 Name: mnhG Funciton: Na/H antiporter, subunit G Locus tag: slr2011 Name: slr2011 Funciton: Predicted subunit of the Na/H antiporter Locus tag: slr2012 Name: mnhB Funciton: Na/H antiporter, subunit B
	slr2007	mnhD	Na/H antiporter, subunit D
	slr2008	mnhC	Na/H antiporter, subunit C
	slr2009	mnhD	Na/H antiporter, subunit D
	slr2010	mnhE	Predicted Na/H antiporter, subunit E
	ssr3409	mnhF	Na/H antiporter, subunit F
	ssr3410	mnhG	Na/H antiporter, subunit G
	slr2011	slr2011	Predicted subunit of the Na/H antiporter
	slr2012	mnhB	Na/H antiporter, subunit B
Position: -208 Score: 4.5 Sequence: TTGGATATTTATCTAT Locus tag: slr0040 Name: cmpA Funciton: Bicarbontate ABC transporter, substrate-binding protein Locus tag: slr0041 Name: cmpB Funciton: Bicarbontate ABC transporter, permease protein Locus tag: slr0042 Name: porB Funciton: Low-CO2 inducible, outer membrane bicarbonate porin Locus tag: slr0043 Name: cmpC Funciton: Bicarbontate ABC transporter, ATP-binding protein 1 Locus tag: slr0044 Name: cmpD Funciton: Bicarbontate ABC transporter, ATP-binding protein 2
	slr0040	cmpA	Bicarbontate ABC transporter, substrate-binding protein
	slr0041	cmpB	Bicarbontate ABC transporter, permease protein
	slr0042	porB	Low-CO2 inducible, outer membrane bicarbonate porin
	slr0043	cmpC	Bicarbontate ABC transporter, ATP-binding protein 1
	slr0044	cmpD	Bicarbontate ABC transporter, ATP-binding protein 2
Position: -71 Score: 5.6 Sequence: ATAGACTTTTGACTAT Locus tag: slr2094 Name: glpX Funciton: Fructose-1,6-bisphosphatase II
	slr2094	glpX	Fructose-1,6-bisphosphatase II
Position: -182 Score: 4.7 Sequence: ATAGACTTTAGCTTAT Position: -136 Score: 5 Sequence: ATAGACAAGAGTCTAT Locus tag: slr1512 Name: sbtA Funciton: High-affinity, low-flux sodium dependent bicarbonate transporter Locus tag: slr1513 Name: sbtB Funciton: Predicted membrane protein
	slr1512	sbtA	High-affinity, low-flux sodium dependent bicarbonate transporter
	slr1513	sbtB	Predicted membrane protein
Position: -204 Score: 3.9 Sequence: ATTGTCGCTTGACTAT Locus tag: sll1732 Name: ndhF3 Funciton: NADH dehydrogenase subunit F Locus tag: sll1733 Name: ndhD3 Funciton: NADH dehydrogenase subunit D Locus tag: sll1734 Name: cupA Funciton: CO2 uptake protein Locus tag: sll1735 Name: cupS Funciton: CO2 uptake transporter, small subunit
	sll1732	ndhF3	NADH dehydrogenase subunit F
	sll1733	ndhD3	NADH dehydrogenase subunit D
	sll1734	cupA	CO2 uptake protein
	sll1735	cupS	CO2 uptake transporter, small subunit
Position: -240 Score: 4.7 Sequence: ATTGGCTTTATTCTAT Position: -179 Score: 4.8 Sequence: ATAGCCATAGGTCTAT Locus tag: sll1594 Name: ccmR Funciton: Carbon assimilation transcriptional regulator, LysR family
	sll1594	ccmR	Carbon assimilation transcriptional regulator, LysR family

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CcmR in Synechocystis sp. PCC 6803

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --