Regulon of CcmR in Synechococcus sp. PCC 7002

Properties
Regulator type:	Transcription factor
TF locus tag:	SYNPCC7002_A0171
Regulator family:	LysR
Regulation mode:	repressor
Biological process:	Carbon dioxide fixation
Effector:
Regulog:	CcmR - Cyanobacteria
Statistics of regulated genes:
- Genes	18
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 72 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - LysR
By pathway - Carbon dioxide fixation

Regulated operons
	Locus Tag	Name	Function
Position: -294 Score: 4.4 Sequence: ATAGTCGAAAGACTAT Locus tag: SYNPCC7002_G0011 Name: porB Funciton: Low-CO2 inducible, outer membrane bicarbonate porin
	SYNPCC7002_G0011	porB	Low-CO2 inducible, outer membrane bicarbonate porin
Position: -134 Score: 4.9 Sequence: ATAGAGCTAAATCTAT Locus tag: SYNPCC7002_A0470 Name: sbtA Funciton: High-affinity, low-flux sodium dependent bicarbonate transporter
	SYNPCC7002_A0470	sbtA	High-affinity, low-flux sodium dependent bicarbonate transporter
Position: -123 Score: 5.2 Sequence: ATAGATATTAAACTAT Locus tag: SYNPCC7002_A2371 Name: bicA Funciton: Bicarbonate transporter Locus tag: SYNPCC7002_A2372 Name: nhaS Funciton: Predicted sodium/hydrogen exchanger Locus tag: SYNPCC7002_A2373 Name: mnhC Funciton: Na/H antiporter, subunit C Locus tag: SYNPCC7002_A2374 Name: mnhD Funciton: Na/H antiporter, subunit D Locus tag: SYNPCC7002_A2375 Name: mnhD Funciton: Na/H antiporter, subunit D Locus tag: SYNPCC7002_A2376 Name: mnhE Funciton: Predicted Na/H antiporter, subunit E Locus tag: SYNPCC7002_A2377 Name: mnhF Funciton: Na/H antiporter, subunit F Locus tag: SYNPCC7002_A2378 Name: mnhG Funciton: Na/H antiporter, subunit G Locus tag: SYNPCC7002_A2379 Name: slr2011 Funciton: Predicted subunit of the Na/H antiporter Locus tag: SYNPCC7002_A2380 Name: mnhB Funciton: Na/H antiporter, subunit B
	SYNPCC7002_A2371	bicA	Bicarbonate transporter
	SYNPCC7002_A2372	nhaS	Predicted sodium/hydrogen exchanger
	SYNPCC7002_A2373	mnhC	Na/H antiporter, subunit C
	SYNPCC7002_A2374	mnhD	Na/H antiporter, subunit D
	SYNPCC7002_A2375	mnhD	Na/H antiporter, subunit D
	SYNPCC7002_A2376	mnhE	Predicted Na/H antiporter, subunit E
	SYNPCC7002_A2377	mnhF	Na/H antiporter, subunit F
	SYNPCC7002_A2378	mnhG	Na/H antiporter, subunit G
	SYNPCC7002_A2379	slr2011	Predicted subunit of the Na/H antiporter
	SYNPCC7002_A2380	mnhB	Na/H antiporter, subunit B
Position: -131 Score: 4.6 Sequence: ATAGACTTAAAGATAT Position: -99 Score: 4.2 Sequence: ATAGAGTCTTGTCTTT Locus tag: SYNPCC7002_A0472 Name: sbtB Funciton: Predicted membrane protein
	SYNPCC7002_A0472	sbtB	Predicted membrane protein
Position: -63 Score: 5 Sequence: ATTGACTCTAGTCTAT Locus tag: SYNPCC7002_A0171 Name: ccmR Funciton: Carbon assimilation transcriptional regulator, LysR family Locus tag: SYNPCC7002_A0172 Name: ndhF3 Funciton: NADH dehydrogenase subunit F Locus tag: SYNPCC7002_A0173 Name: ndhD3 Funciton: NADH dehydrogenase subunit D Locus tag: SYNPCC7002_A0174 Name: cupA Funciton: CO2 uptake protein Locus tag: SYNPCC7002_A0175 Name: cupS Funciton: CO2 uptake transporter, small subunit
	SYNPCC7002_A0171	ccmR	Carbon assimilation transcriptional regulator, LysR family
	SYNPCC7002_A0172	ndhF3	NADH dehydrogenase subunit F
	SYNPCC7002_A0173	ndhD3	NADH dehydrogenase subunit D
	SYNPCC7002_A0174	cupA	CO2 uptake protein
	SYNPCC7002_A0175	cupS	CO2 uptake transporter, small subunit

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CcmR in Synechococcus sp. PCC 7002

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --