Regulon of CcmR in Cyanothece sp. PCC 8801
| Regulator type: | Transcription factor |
| TF locus tag: | PCC8801_3406 |
| Regulator family: | LysR |
| Regulation mode: | repressor |
| Biological process: | Carbon dioxide fixation |
| Effector: | |
| Regulog: | CcmR - Cyanobacteria |
| Statistics of regulated genes: | |
| - Genes | 16 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By TF family - LysR
- By pathway - Carbon dioxide fixation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -74
Score: 5 Sequence: ATAGACTTTTGACTAA
Locus tag: PCC8801_3646
Name: glpX Funciton: Fructose-1,6-bisphosphatase II |
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glpX
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Fructose-1,6-bisphosphatase II
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Position: -174
Score: 5.4 Sequence: ATAGATAAATGTCTAT
Locus tag: PCC8801_1249
Name: sbtA Funciton: High-affinity, low-flux sodium dependent bicarbonate transporter
Locus tag: PCC8801_1248
Name: sbtB Funciton: Predicted membrane protein |
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sbtA
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High-affinity, low-flux sodium dependent bicarbonate transporter
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sbtB
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Predicted membrane protein
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Position: -71
Score: 5.6 Sequence: ATAGACTAAAGTCTAT
Position: -8
Score: 5 Sequence: ATTGTTATATGTCTAT
Locus tag: PCC8801_4247
Name: ndhF3 Funciton: NADH dehydrogenase subunit F
Locus tag: PCC8801_4248
Name: ecaB2 Funciton: Periplasmic carbonic anhydrase
Locus tag: PCC8801_4249
Name: ndhD3 Funciton: NADH dehydrogenase subunit D
Locus tag: PCC8801_4250
Name: cupA Funciton: CO2 uptake protein |
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ndhF3
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NADH dehydrogenase subunit F
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ecaB2
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Periplasmic carbonic anhydrase
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ndhD3
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NADH dehydrogenase subunit D
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cupA
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CO2 uptake protein
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Position: -144
Score: 4.4 Sequence: ATAGAATTTAATCAAA
Position: -112
Score: 4.8 Sequence: ATTGTATTTAATCTAT
Locus tag: PCC8801_3406
Name: ccmR Funciton: Carbon assimilation transcriptional regulator, LysR family |
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ccmR
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Carbon assimilation transcriptional regulator, LysR family
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Position: -268
Score: 4.5 Sequence: ATACATATTAAGCTAT
Locus tag: PCC8801_3521
Name: cmpA Funciton: Bicarbontate ABC transporter, substrate-binding protein
Locus tag: PCC8801_3520
Name: cmpB Funciton: Bicarbontate ABC transporter, permease protein
Locus tag: PCC8801_3519
Name: cmpC Funciton: Bicarbontate ABC transporter, ATP-binding protein 1
Locus tag: PCC8801_3518
Name: cmpD Funciton: Bicarbontate ABC transporter, ATP-binding protein 2 |
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cmpA
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Bicarbontate ABC transporter, substrate-binding protein
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cmpB
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Bicarbontate ABC transporter, permease protein
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cmpC
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Bicarbontate ABC transporter, ATP-binding protein 1
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cmpD
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Bicarbontate ABC transporter, ATP-binding protein 2
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Position: -56
Score: 4.8 Sequence: ATAGGCTTTAAGCTAT
Position: -24
Score: 4.7 Sequence: ATAGTTTTTTGTATAT
Locus tag: PCC8801_2762
Name: mnhC Funciton: Na/H antiporter, subunit C
Locus tag: PCC8801_2761
Name: mnhD Funciton: Na/H antiporter, subunit D
Locus tag: PCC8801_2760
Name: mnhE Funciton: Predicted Na/H antiporter, subunit E |
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mnhC
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Na/H antiporter, subunit C
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mnhD
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Na/H antiporter, subunit D
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mnhE
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Predicted Na/H antiporter, subunit E
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Position: -46
Score: 5.2 Sequence: ATAGCTTTTAATCTAT
Position: -14
Score: 4.2 Sequence: ATAGAATAAATACAAT
Locus tag: PCC8801_1398
Name: cce_1687 Funciton: Predicted membrane protein (COG3431) |
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cce_1687
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Predicted membrane protein (COG3431)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |