Regulon of CcmR in Cyanothece sp. PCC 8801

Properties
Regulator type:	Transcription factor
TF locus tag:	PCC8801_3406
Regulator family:	LysR
Regulation mode:	repressor
Biological process:	Carbon dioxide fixation
Effector:
Regulog:	CcmR - Cyanobacteria
Statistics of regulated genes:
- Genes	16
- Operons	7
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 72 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - LysR
By pathway - Carbon dioxide fixation

Regulated operons
	Locus Tag	Name	Function
Position: -74 Score: 5 Sequence: ATAGACTTTTGACTAA Locus tag: PCC8801_3646 Name: glpX Funciton: Fructose-1,6-bisphosphatase II
	PCC8801_3646	glpX	Fructose-1,6-bisphosphatase II
Position: -174 Score: 5.4 Sequence: ATAGATAAATGTCTAT Locus tag: PCC8801_1249 Name: sbtA Funciton: High-affinity, low-flux sodium dependent bicarbonate transporter Locus tag: PCC8801_1248 Name: sbtB Funciton: Predicted membrane protein
	PCC8801_1249	sbtA	High-affinity, low-flux sodium dependent bicarbonate transporter
	PCC8801_1248	sbtB	Predicted membrane protein
Position: -71 Score: 5.6 Sequence: ATAGACTAAAGTCTAT Position: -8 Score: 5 Sequence: ATTGTTATATGTCTAT Locus tag: PCC8801_4247 Name: ndhF3 Funciton: NADH dehydrogenase subunit F Locus tag: PCC8801_4248 Name: ecaB2 Funciton: Periplasmic carbonic anhydrase Locus tag: PCC8801_4249 Name: ndhD3 Funciton: NADH dehydrogenase subunit D Locus tag: PCC8801_4250 Name: cupA Funciton: CO2 uptake protein
	PCC8801_4247	ndhF3	NADH dehydrogenase subunit F
	PCC8801_4248	ecaB2	Periplasmic carbonic anhydrase
	PCC8801_4249	ndhD3	NADH dehydrogenase subunit D
	PCC8801_4250	cupA	CO2 uptake protein
Position: -144 Score: 4.4 Sequence: ATAGAATTTAATCAAA Position: -112 Score: 4.8 Sequence: ATTGTATTTAATCTAT Locus tag: PCC8801_3406 Name: ccmR Funciton: Carbon assimilation transcriptional regulator, LysR family
	PCC8801_3406	ccmR	Carbon assimilation transcriptional regulator, LysR family
Position: -268 Score: 4.5 Sequence: ATACATATTAAGCTAT Locus tag: PCC8801_3521 Name: cmpA Funciton: Bicarbontate ABC transporter, substrate-binding protein Locus tag: PCC8801_3520 Name: cmpB Funciton: Bicarbontate ABC transporter, permease protein Locus tag: PCC8801_3519 Name: cmpC Funciton: Bicarbontate ABC transporter, ATP-binding protein 1 Locus tag: PCC8801_3518 Name: cmpD Funciton: Bicarbontate ABC transporter, ATP-binding protein 2
	PCC8801_3521	cmpA	Bicarbontate ABC transporter, substrate-binding protein
	PCC8801_3520	cmpB	Bicarbontate ABC transporter, permease protein
	PCC8801_3519	cmpC	Bicarbontate ABC transporter, ATP-binding protein 1
	PCC8801_3518	cmpD	Bicarbontate ABC transporter, ATP-binding protein 2
Position: -56 Score: 4.8 Sequence: ATAGGCTTTAAGCTAT Position: -24 Score: 4.7 Sequence: ATAGTTTTTTGTATAT Locus tag: PCC8801_2762 Name: mnhC Funciton: Na/H antiporter, subunit C Locus tag: PCC8801_2761 Name: mnhD Funciton: Na/H antiporter, subunit D Locus tag: PCC8801_2760 Name: mnhE Funciton: Predicted Na/H antiporter, subunit E
	PCC8801_2762	mnhC	Na/H antiporter, subunit C
	PCC8801_2761	mnhD	Na/H antiporter, subunit D
	PCC8801_2760	mnhE	Predicted Na/H antiporter, subunit E
Position: -46 Score: 5.2 Sequence: ATAGCTTTTAATCTAT Position: -14 Score: 4.2 Sequence: ATAGAATAAATACAAT Locus tag: PCC8801_1398 Name: cce_1687 Funciton: Predicted membrane protein (COG3431)
	PCC8801_1398	cce_1687	Predicted membrane protein (COG3431)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CcmR in Cyanothece sp. PCC 8801

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --