Regulon of CcmR in Cyanothece sp. ATCC 51142
Regulator type: | Transcription factor |
TF locus tag: | cce_3731 |
Regulator family: | LysR |
Regulation mode: | repressor |
Biological process: | Carbon dioxide fixation |
Effector: | |
Regulog: | CcmR - Cyanobacteria |
Statistics of regulated genes: | |
- Genes | 22 |
- Operons | 8 |
Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |

Member of regulog collections
- By taxonomy - Cyanobacteria
- By TF family - LysR
- By pathway - Carbon dioxide fixation
Locus Tag | Name | Function | |
---|---|---|---|
Position: -299
Score: 4.9 Sequence: ATAGATAAATACCTAT
Locus tag: cce_0305
Name: cmpA Funciton: Bicarbontate ABC transporter, substrate-binding protein
Locus tag: cce_0304
Name: cmpB Funciton: Bicarbontate ABC transporter, permease protein
Locus tag: cce_0303
Name: cmpC Funciton: Bicarbontate ABC transporter, ATP-binding protein 1
Locus tag: cce_0302
Name: cmpD Funciton: Bicarbontate ABC transporter, ATP-binding protein 2 |
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cmpA
|
Bicarbontate ABC transporter, substrate-binding protein
|
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cmpB
|
Bicarbontate ABC transporter, permease protein
|
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cmpC
|
Bicarbontate ABC transporter, ATP-binding protein 1
|
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cmpD
|
Bicarbontate ABC transporter, ATP-binding protein 2
|
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Position: -52
Score: 4.5 Sequence: ATAGATTTTTGTCTTA
Locus tag: cce_2937
Name: sbtB Funciton: Predicted membrane protein |
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sbtB
|
Predicted membrane protein
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Position: -74
Score: 5 Sequence: ATAGACTTTTGACTAA
Locus tag: cce_3974
Name: glpX Funciton: Fructose-1,6-bisphosphatase II |
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glpX
|
Fructose-1,6-bisphosphatase II
|
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Position: -232
Score: 4.5 Sequence: ATAGTAATTAGCCTAT
Position: -200
Score: 5 Sequence: ATAGAATCTAGTCTAT
Locus tag: cce_1689
Name: bicA Funciton: Bicarbonate transporter
Locus tag: cce_1688
Name: nhaS Funciton: Predicted sodium/hydrogen exchanger
Locus tag: cce_1687
Name: cce_1687 Funciton: Predicted membrane protein (COG3431)
Locus tag: cce_1686
Name: mnhC Funciton: Na/H antiporter, subunit C
Locus tag: cce_1685
Name: mnhD Funciton: Na/H antiporter, subunit D
Locus tag: cce_1684
Name: mnhE Funciton: Predicted Na/H antiporter, subunit E
Locus tag: cce_1683
Name: mnhF Funciton: Na/H antiporter, subunit F
Locus tag: cce_1682
Name: mnhG Funciton: Na/H antiporter, subunit G
Locus tag: cce_1681
Name: slr2011 Funciton: Predicted subunit of the Na/H antiporter
Locus tag: cce_1680
Name: mnhB Funciton: Na/H antiporter, subunit B |
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bicA
|
Bicarbonate transporter
|
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nhaS
|
Predicted sodium/hydrogen exchanger
|
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cce_1687
|
Predicted membrane protein (COG3431)
|
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mnhC
|
Na/H antiporter, subunit C
|
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mnhD
|
Na/H antiporter, subunit D
|
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mnhE
|
Predicted Na/H antiporter, subunit E
|
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mnhF
|
Na/H antiporter, subunit F
|
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mnhG
|
Na/H antiporter, subunit G
|
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slr2011
|
Predicted subunit of the Na/H antiporter
|
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mnhB
|
Na/H antiporter, subunit B
|
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Position: -181
Score: 4 Sequence: ATAGATCGATATATAT
Locus tag: cce_2939
Name: sbtA Funciton: High-affinity, low-flux sodium dependent bicarbonate transporter |
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sbtA
|
High-affinity, low-flux sodium dependent bicarbonate transporter
|
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Position: -180
Score: 5.1 Sequence: ATTGATTTTAGGCTAT
Locus tag: cce_2494
Name: mnhD Funciton: Na/H antiporter, subunit D |
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mnhD
|
Na/H antiporter, subunit D
|
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Position: -133
Score: 4.3 Sequence: ATAGATTTATTTCAAC
Position: -101
Score: 4.8 Sequence: ATGGAAATAAGTCTAT
Locus tag: cce_3731
Name: ccmR Funciton: Carbon assimilation transcriptional regulator, LysR family |
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ccmR
|
Carbon assimilation transcriptional regulator, LysR family
|
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Position: -74
Score: 5.5 Sequence: ATAGACTTAATTCTAT
Locus tag: cce_0603
Name: ndhF3 Funciton: NADH dehydrogenase subunit F
Locus tag: cce_0604
Name: ndhD3 Funciton: NADH dehydrogenase subunit D
Locus tag: cce_0605
Name: cupA Funciton: CO2 uptake protein |
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ndhF3
|
NADH dehydrogenase subunit F
|
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ndhD3
|
NADH dehydrogenase subunit D
|
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cupA
|
CO2 uptake protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |