Regulon of CodY in Bacillus pumilus SAFR-032
| Regulator type: | Transcription factor |
| TF locus tag: | BPUM_1515 |
| Regulator family: | CodY |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Guanosine triphosphate; Branched-chain amino acids |
| Regulog: | CodY - Bacillales |
| Statistics of regulated genes: | |
| - Genes | 88 |
| - Operons | 47 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - CodY
- By effector - Guanosine triphosphate
- By effector - Branched-chain amino acids
- By pathway - Amino acid metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -136
Score: 4.4 Sequence: TTTTTTTAGAAAAAT
Locus tag: BPUM_1603
Name: tdh Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103)
Locus tag: BPUM_1604
Name: kbl Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) |
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tdh
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L-threonine 3-dehydrogenase (EC 1.1.1.103)
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kbl
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2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
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Position: -366
Score: 4 Sequence: TATTTTCGGTAAATA
Locus tag: BPUM_0319
Name: srfAA Funciton: Surfactin synthetase subunit 1
Locus tag: BPUM_0320
Name: srfAB Funciton: Surfactin synthetase subunit 2
Locus tag: BPUM_0321
Name: srfAC Funciton: Bacitracin synthetase 3 (BA3)( EC:5.1.1.11,EC:5.1.1.13 )
Locus tag: BPUM_0322
Name: srfAA Funciton: Surfactin synthetase subunit 1
Locus tag: BPUM_0323
Name: srfAA Funciton: Surfactin synthetase subunit 1
Locus tag: BPUM_0324
Name: srfAD Funciton: Surfactin synthetase thioesterase subunit (EC 3.1.2.-) |
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srfAA
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Surfactin synthetase subunit 1
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srfAB
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Surfactin synthetase subunit 2
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srfAC
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Bacitracin synthetase 3 (BA3)( EC:5.1.1.11,EC:5.1.1.13 )
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srfAA
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Surfactin synthetase subunit 1
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srfAA
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Surfactin synthetase subunit 1
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srfAD
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Surfactin synthetase thioesterase subunit (EC 3.1.2.-)
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Position: -252
Score: 5 Sequence: AATTTTCTAAAAATA
Position: -230
Score: 4.4 Sequence: AATAGTATGAAAATA
Locus tag: BPUM_0421
Name: gltO Funciton: Proton/sodium-glutamate symport protein |
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gltO
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Proton/sodium-glutamate symport protein
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Position: -77
Score: 4.6 Sequence: AGTTTTTTAAAAATT
Locus tag: BPUM_2616
Name: acsA Funciton: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
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acsA
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Acetyl-coenzyme A synthetase (EC 6.2.1.1)
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Position: -27
Score: 4.4 Sequence: AAATTACAAAAAATT
Locus tag: BPUM_1877
Name: yoyD Funciton: Hypothetical protein
Locus tag: BPUM_1878
Name: yodF Funciton: SSS family solute:sodium (Na+) symporter |
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yoyD
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Hypothetical protein
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yodF
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SSS family solute:sodium (Na+) symporter
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Position: -83
Score: 4.7 Sequence: AATTGTGAGAAAATT
Position: -52
Score: 4.6 Sequence: ATTTTTCTGAGAATT
Locus tag: BPUM_1699
Name: citB Funciton: Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
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citB
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Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
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Position: -206
Score: 4.7 Sequence: ATTATTCAGAAAATA
Locus tag: BPUM_2579
Name: ackA Funciton: Acetate kinase (EC 2.7.2.1) |
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ackA
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Acetate kinase (EC 2.7.2.1)
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Position: -62
Score: 4.9 Sequence: TTTTTTCAGAAAATT
Locus tag: BPUM_1860
Name: yocS Funciton: Sodium-dependent transporter |
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yocS
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Sodium-dependent transporter
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Position: -52
Score: 5 Sequence: ATTATTCTGAAAATT
Locus tag: BPUM_0276
Name: ycgA Funciton: Putative integral inner membrane protein |
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ycgA
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Putative integral inner membrane protein
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Position: -116
Score: 5 Sequence: AATTTTCAGAATAAT
Locus tag: BPUM_0275
Name: amhX Funciton: Amidohydrolase amhX (EC 3.5.1.-) |
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amhX
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Amidohydrolase amhX (EC 3.5.1.-)
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Position: -227
Score: 4.4 Sequence: TTTATTAAGAAAATT
Locus tag: BPUM_3562
Name: metE2 Funciton: Methionine synthase II (cobalamin-independent) |
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metE2
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Methionine synthase II (cobalamin-independent)
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Position: -44
Score: 4.5 Sequence: AATTAACAGAATATT
Locus tag: BPUM_2605
Name: braB Funciton: Branched-chain amino acid transport system carrier protein |
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braB
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Branched-chain amino acid transport system carrier protein
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Position: -44
Score: 4.5 Sequence: AAAATTCTTAAAATT
Locus tag: BPUM_0501
Name: gltP Funciton: Proton/glutamate symport protein @ Proton/aspartate symport protein |
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gltP
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Proton/glutamate symport protein @ Proton/aspartate symport protein
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Position: -210
Score: 4.3 Sequence: AAATGTCTGATTATT
Locus tag: BPUM_2556
Name: citZ Funciton: Citrate synthase (si) (EC 2.3.3.1)
Locus tag: BPUM_2555
Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Locus tag: BPUM_2554
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) |
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citZ
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Citrate synthase (si) (EC 2.3.3.1)
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icd
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Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
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mdh
|
Malate dehydrogenase (EC 1.1.1.37)
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Position: -201
Score: 4.5 Sequence: AATTTATTGACAATT
Position: -134
Score: 4.5 Sequence: AATTTTCCGAAATTT
Locus tag: BPUM_2504
Name: yslB Funciton: Predicted hydrocarbon binding protein (V4R domain) |
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yslB
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Predicted hydrocarbon binding protein (V4R domain)
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Position: -161
Score: 4.5 Sequence: AAATTTCGGAAAATT
Position: -94
Score: 4.5 Sequence: AATTGTCAATAAATT
Locus tag: BPUM_2503
Name: sdhC Funciton: Succinate dehydrogenase, cytochrome b subunit
Locus tag: BPUM_2502
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: BPUM_2501
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
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sdhC
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Succinate dehydrogenase, cytochrome b subunit
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sdhA
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Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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sdhB
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Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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Position: -226
Score: 4.4 Sequence: AATTGTCAGATTAAT
Locus tag: BPUM_3500
Name: ybgE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
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ybgE
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Branched-chain amino acid aminotransferase (EC 2.6.1.42)
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Position: -233
Score: 4.5 Sequence: ATTTTTTTAAAAATA
Locus tag: BPUM_2823
Name: nupN Funciton: Guanosine ABC transport system, substrate-binding component
Locus tag: BPUM_2824
Name: nupO Funciton: Guanosine ABC transport system, ATP-binding protein
Locus tag: BPUM_2825
Name: nupP Funciton: Guanosine ABC transport system, permease component Ia (FIG025991) / Unspecified monosaccharide ABC transport system, permease component Ib (FIG143636)
Locus tag: BPUM_2826
Name: nupQ Funciton: Guanosine ABC transport system, permease component 2 |
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nupN
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Guanosine ABC transport system, substrate-binding component
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nupO
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Guanosine ABC transport system, ATP-binding protein
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nupP
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Guanosine ABC transport system, permease component Ia (FIG025991) / Unspecified monosaccharide ABC transport system, permease component Ib (FIG143636)
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nupQ
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Guanosine ABC transport system, permease component 2
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Position: -196
Score: 5 Sequence: AATTTTCAGATTATT
Locus tag: BPUM_0906
Name: yhdT Funciton: Hemolysins and related proteins containing CBS domains |
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yhdT
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Hemolysins and related proteins containing CBS domains
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Position: -153
Score: 5 Sequence: AATAATCTGAAAATT
Locus tag: BPUM_0905
Name: cueR Funciton: Transcriptional regulator, MerR family |
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cueR
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Transcriptional regulator, MerR family
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Position: -36
Score: 5 Sequence: AATTTTTAGAAAATA
Locus tag: BPUM_0503
Name: yaaC Funciton: Conserved hypothetical protein |
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yaaC
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Conserved hypothetical protein
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Position: -231
Score: 4.5 Sequence: AAATTTCAGAATAAT
Position: -33
Score: 4.3 Sequence: AATATTCTAAAAACA
Locus tag: BPUM_0543
Name: gabP Funciton: Gamma-aminobutyrate (GABA) permease |
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gabP
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Gamma-aminobutyrate (GABA) permease
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Position: -185
Score: 4.8 Sequence: AATATTTTGAAAATA
Locus tag: BPUM_2888
Name: hom Funciton: Homoserine dehydrogenase (EC 1.1.1.3)
Locus tag: BPUM_2887
Name: thrC Funciton: Threonine synthase (EC 4.2.3.1)
Locus tag: BPUM_2886
Name: thrB Funciton: Homoserine kinase (EC 2.7.1.39) |
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hom
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Homoserine dehydrogenase (EC 1.1.1.3)
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thrC
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Threonine synthase (EC 4.2.3.1)
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thrB
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Homoserine kinase (EC 2.7.1.39)
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Position: -43
Score: 5 Sequence: AATTTTCTGAATATA
Locus tag: BPUM_3043
Name: opuCA Funciton: Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA
Locus tag: BPUM_3042
Name: opuCB Funciton: Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB
Locus tag: BPUM_3041
Name: opuCC Funciton: Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC
Locus tag: BPUM_3040
Name: opuCD Funciton: Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD |
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opuCA
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Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA
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opuCB
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Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB
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opuCC
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Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC
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opuCD
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Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD
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Position: -182
Score: 4.9 Sequence: AATTTTCTGATAAAT
Locus tag: BPUM_0644
Name: gatC Funciton: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)
Locus tag: BPUM_0645
Name: gatA Funciton: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)
Locus tag: BPUM_0646
Name: gatB Funciton: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
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gatC
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Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)
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gatA
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Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)
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gatB
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Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)
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Position: -222
Score: 5 Sequence: AATTTTTAGACAATT
Locus tag: BPUM_0978
Name: comK Funciton: Competence transcription factor |
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comK
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Competence transcription factor
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Position: -166
Score: 4.7 Sequence: AATTGTCTAATAATT
Position: -54
Score: 4.6 Sequence: AAGTGTCTGAAAATT
Locus tag: BPUM_2473
Name: dat Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
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dat
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Branched-chain amino acid aminotransferase (EC 2.6.1.42)
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Position: -183
Score: 4.6 Sequence: AATTCTCAGAAAAAT
Position: -152
Score: 4.7 Sequence: AATTTTCTCACAATT
Locus tag: BPUM_1698
Name: sspO Funciton: Small, acid-soluble spore protein O
Locus tag: BPUM_1697
Name: sspP Funciton: Small, acid-soluble spore protein P |
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sspO
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Small, acid-soluble spore protein O
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sspP
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Small, acid-soluble spore protein P
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Position: -131
Score: 4.5 Sequence: TATTTTCTAACTATT
Locus tag: BPUM_0158
Name: murQ Funciton: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
Locus tag: BPUM_0157
Name: murR Funciton: Transcriptional regulator of muropeptide rescue pathway operon, RpiR family
Locus tag: BPUM_0156
Name: ybbF Funciton: PTS system, IIB component (EC 2.7.1.69) / PTS system, IIC component (EC 2.7.1.69)
Locus tag: BPUM_0155
Name: amiE Funciton: Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides
Locus tag: BPUM_0154
Name: nagZ Funciton: Beta--N-acetylglucosaminidase
Locus tag: BPUM_0153
Name: ybbC Funciton: Hypothetical protein |
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murQ
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N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
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murR
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Transcriptional regulator of muropeptide rescue pathway operon, RpiR family
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ybbF
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PTS system, IIB component (EC 2.7.1.69) / PTS system, IIC component (EC 2.7.1.69)
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amiE
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Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides
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nagZ
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Beta--N-acetylglucosaminidase
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ybbC
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Hypothetical protein
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Position: -111
Score: 4.4 Sequence: ATTATTCGGAAAATT
Locus tag: BPUM_2154
Name: spo0A Funciton: Stage 0 sporulation two-component response regulator (Spo0A) |
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spo0A
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Stage 0 sporulation two-component response regulator (Spo0A)
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Position: -55
Score: 5 Sequence: ATTTTTTAGAAAATT
Locus tag: BPUM_1184
Name: dppA Funciton: D-aminopeptidase (EC 3.4.11.-)
Locus tag: BPUM_1185
Name: dppB Funciton: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)
Locus tag: BPUM_1186
Name: dppC Funciton: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)
Locus tag: BPUM_1187
Name: dppD Funciton: Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)
Locus tag: BPUM_1188
Name: dppE Funciton: Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) |
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dppA
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D-aminopeptidase (EC 3.4.11.-)
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dppB
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Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)
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dppC
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Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)
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dppD
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Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)
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dppE
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Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)
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Position: -231
Score: 4.9 Sequence: ATTTATCAGAAAATT
Locus tag: BPUM_0643
Name: opuE Funciton: Sodium/proline symporter |
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opuE
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Sodium/proline symporter
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Position: -38
Score: 4.4 Sequence: AATATACAGAAAAGT
Locus tag: BPUM_1071
Name: oppB Funciton: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Locus tag: BPUM_1072
Name: oppC Funciton: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
Locus tag: BPUM_1073
Name: oppD Funciton: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
Locus tag: BPUM_1074
Name: oppF Funciton: Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) |
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oppB
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Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
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oppC
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Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
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oppD
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Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
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oppF
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Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
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Position: -140
Score: 4.4 Sequence: AATTTTCTGTATTTT
Locus tag: BPUM_1118
Name: ycjH Funciton: Putative acetyl esterase YjcH (EC 3.1.1.-)
Locus tag: BPUM_1117
Name: yjcG Funciton: RNA ligase/cyclic nucleotide phosphodiesterase
Locus tag: BPUM_1116
Name: yjcF Funciton: GNAT family acetyltransferase YjcF |
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ycjH
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Putative acetyl esterase YjcH (EC 3.1.1.-)
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yjcG
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RNA ligase/cyclic nucleotide phosphodiesterase
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yjcF
|
GNAT family acetyltransferase YjcF
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Position: -64
Score: 4.8 Sequence: TATTTTTTGAATATT
Locus tag: BPUM_1911
Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19) |
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ilvA
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Threonine dehydratase biosynthetic (EC 4.3.1.19)
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Position: -103
Score: 4.6 Sequence: AAATTTCAGAAATTT
Locus tag: BPUM_1672
Name: lutA Funciton: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit
Locus tag: BPUM_1673
Name: lutB Funciton: Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit
Locus tag: BPUM_1674
Name: lutC Funciton: Predicted L-lactate dehydrogenase, hypothetical protein subunit |
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lutA
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Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit
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lutB
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Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit
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lutC
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Predicted L-lactate dehydrogenase, hypothetical protein subunit
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Position: -109
Score: 4.6 Sequence: GATTTTTTGAAAATT
Locus tag: BPUM_3062
Name: lutR Funciton: Transcriptional regulator of L-lactate utilization, GntR family |
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lutR
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Transcriptional regulator of L-lactate utilization, GntR family
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Position: -43
Score: 4.6 Sequence: TATTTTTTGAAAAGT
Locus tag: BPUM_3302
Name: spoIIQ Funciton: Stage II sporulation protein related to metaloproteases (SpoIIQ) |
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spoIIQ
|
Stage II sporulation protein related to metaloproteases (SpoIIQ)
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Position: -83
Score: 4.5 Sequence: AATAAACAGAAAATT
Locus tag: BPUM_1922
Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9) |
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ilvD
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Dihydroxy-acid dehydratase (EC 4.2.1.9)
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Position: -45
Score: 4.5 Sequence: AATTATCAGATATTT
Locus tag: BPUM_2039
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
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serA
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D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
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Position: -93
Score: 4.6 Sequence: AATTTTTAAAAAACT
Locus tag: BPUM_2617
Name: acuA Funciton: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Locus tag: BPUM_2618
Name: acuB Funciton: Component of the acetoin degradation regulation pathway
Locus tag: BPUM_2619
Name: acuC Funciton: NAD-independent protein deacetylase AcuC |
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acuA
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Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
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acuB
|
Component of the acetoin degradation regulation pathway
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acuC
|
NAD-independent protein deacetylase AcuC
|
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Position: -80
Score: 4.7 Sequence: AATTTTCTGAAATAT
Locus tag: BPUM_0697
Name: yfmB Funciton: Hypothetical protein |
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yfmB
|
Hypothetical protein
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Position: -187
Score: 4.5 Sequence: AATTTTAAATAAATT
Locus tag: BPUM_0343
Name: yclF Funciton: POT family proton (H+)-dependent oligopeptide transporter |
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yclF
|
POT family proton (H+)-dependent oligopeptide transporter
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Position: -273
Score: 4.6 Sequence: TTTTTTCTGAAAAAT
Position: -140
Score: 4.4 Sequence: TTTTTTCAAACAATT
Locus tag: BPUM_0965
Name: gltT Funciton: Proton/sodium-glutamate symport protein |
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gltT
|
Proton/sodium-glutamate symport protein
|
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Position: -158
Score: 4.6 Sequence: AATAGTTTGAATATT
Locus tag: BPUM_2600
Name: ytcI Funciton: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
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ytcI
|
Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
|
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Position: -297
Score: 4.4 Sequence: AAAATACAGAAAATT
Position: -287
Score: 4.1 Sequence: AAATTTCAATTAATT
Locus tag: BPUM_1119
Name: metI Funciton: Cystathionine gamma-synthase (EC 2.5.1.48)
Locus tag: BPUM_1120
Name: metC Funciton: Cystathionine beta-lyase (EC 4.4.1.8) |
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metI
|
Cystathionine gamma-synthase (EC 2.5.1.48)
|
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metC
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Cystathionine beta-lyase (EC 4.4.1.8)
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Position: -58
Score: 4.2 Sequence: AAGATTCTAACAATT
Locus tag: BPUM_0954
Name: yhaA Funciton: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) |
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yhaA
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N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |