Regulon of NtrC in Escherichia coli str. K-12 substr. MG1655

Properties
Regulator type:	Transcription factor
TF locus tag:	b3868
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Enterobacteriales
Statistics of regulated genes:
- Genes	39
- Operons	12
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 130 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -38 Score: 6.1 Sequence: TGCACTAAAATGGTGCA Locus tag: b3869 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: b3868 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	b3869	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	b3868	ntrC	Nitrogen regulation protein NR(I), Fis family
Position: -221 Score: 5.9 Sequence: TGCACCAACATGGTGCT Position: -189 Score: 5.4 Sequence: AGCACTATATTGGTGCA Locus tag: b3870 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	b3870	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -148 Score: 4.1 Sequence: TGCACCAAAACTGCACT Position: -127 Score: 3.5 Sequence: TGCACAAATGTTGATCA Locus tag: b1488 Name: ddpX Funciton: D-alanyl-D-alanine dipeptidase (EC 3.4.13.-) Locus tag: b1487 Name: ddpA Funciton: Dipeptide ABC transporter, substrate-binding component (TC 3.A.1.5.2) Locus tag: b1486 Name: ddpB Funciton: Dipeptide ABC transporter, transmembrane component 1 (TC 3.A.1.5.2) Locus tag: b1485 Name: ddpC Funciton: Dipeptide ABC transporter, transmembrane component 2 (TC 3.A.1.5.2) Locus tag: b1484 Name: ddpD Funciton: Dipeptide ABC transporter, transmembrane component 3 (TC 3.A.1.5.2) Locus tag: b1483 Name: ddpF Funciton: Dipeptide ABC transporter, ABC-binding component (TC 3.A.1.5.2)
	b1488	ddpX	D-alanyl-D-alanine dipeptidase (EC 3.4.13.-)
	b1487	ddpA	Dipeptide ABC transporter, substrate-binding component (TC 3.A.1.5.2)
	b1486	ddpB	Dipeptide ABC transporter, transmembrane component 1 (TC 3.A.1.5.2)
	b1485	ddpC	Dipeptide ABC transporter, transmembrane component 2 (TC 3.A.1.5.2)
	b1484	ddpD	Dipeptide ABC transporter, transmembrane component 3 (TC 3.A.1.5.2)
	b1483	ddpF	Dipeptide ABC transporter, ABC-binding component (TC 3.A.1.5.2)
Position: -323 Score: 4 Sequence: TGCCCGCTTTTGGTGCG Position: -303 Score: 3.9 Sequence: TGCGTCAGAATGGCGCA Locus tag: b1748 Name: astC Funciton: Succinylornithine transaminase (EC 2.6.1.81) Locus tag: b1747 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: b1746 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: b1745 Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23) Locus tag: b1744 Name: astE Funciton: Succinylglutamate desuccinylase (EC 3.5.1.96)
	b1748	astC	Succinylornithine transaminase (EC 2.6.1.81)
	b1747	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	b1746	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	b1745	astB	Succinylarginine dihydrolase (EC 3.5.3.23)
	b1744	astE	Succinylglutamate desuccinylase (EC 3.5.1.96)
Position: -168 Score: 3.9 Sequence: TGCACTCTCATCGCGCA Locus tag: b1012 Name: rutA Funciton: Pyrimidine oxygenase Locus tag: b1011 Name: rutB Funciton: Peroxyureidoacrylate / ureidoacrylate amido hydrolase Locus tag: b1010 Name: rutC Funciton: Aminoacrylate peracid reductase Locus tag: b1009 Name: rutD Funciton: Aminoacrylate hydrolase Locus tag: b1008 Name: rutE Funciton: 3-hydroxy propionic acid dehydrogenase Locus tag: b1007 Name: rutF Funciton: Flavin reductase Locus tag: b1006 Name: rutG Funciton: Uracil permease
	b1012	rutA	Pyrimidine oxygenase
	b1011	rutB	Peroxyureidoacrylate / ureidoacrylate amido hydrolase
	b1010	rutC	Aminoacrylate peracid reductase
	b1009	rutD	Aminoacrylate hydrolase
	b1008	rutE	3-hydroxy propionic acid dehydrogenase
	b1007	rutF	Flavin reductase
	b1006	rutG	Uracil permease
Position: -137 Score: 5.2 Sequence: TGCACTGTCATAGTGCG Locus tag: b0450 Name: glnK Funciton: nitrogen regulatory protein P-II Locus tag: b0451 Name: amtB Funciton: Ammonium transporter
	b0450	glnK	nitrogen regulatory protein P-II
	b0451	amtB	Ammonium transporter
Position: -87 Score: 4.4 Sequence: TGCACAATAAAGTTGCA Locus tag: b0655 Name: gltI Funciton: Glutamate-aspartate ABC transporter, substrate-binding component Locus tag: b0654 Name: gltJ Funciton: Glutamate-aspartate ABC transporter, transmembrane component 1 Locus tag: b0653 Name: gltK Funciton: Glutamate-aspartate ABC transporter, transmembrane component 2 Locus tag: b0652 Name: gltL Funciton: Glutamate-aspartate ABC transporter, ATP-binding component
	b0655	gltI	Glutamate-aspartate ABC transporter, substrate-binding component
	b0654	gltJ	Glutamate-aspartate ABC transporter, transmembrane component 1
	b0653	gltK	Glutamate-aspartate ABC transporter, transmembrane component 2
	b0652	gltL	Glutamate-aspartate ABC transporter, ATP-binding component
Position: -162 Score: 5.5 Sequence: TGCACTATCGTGGTGCA Locus tag: b2309 Name: hisJ Funciton: Histidine ABC transporter, substrate-binding component Locus tag: b2308 Name: hisQ Funciton: Histidine ABC transporter, transmembrane component 1 Locus tag: b2307 Name: hisM Funciton: Histidine ABC transporter, transmembrane component 2 Locus tag: b2306 Name: hisP Funciton: Histidine ABC transporter, ATP-binding component
	b2309	hisJ	Histidine ABC transporter, substrate-binding component
	b2308	hisQ	Histidine ABC transporter, transmembrane component 1
	b2307	hisM	Histidine ABC transporter, transmembrane component 2
	b2306	hisP	Histidine ABC transporter, ATP-binding component
Position: -173 Score: 4.9 Sequence: CGCACCAGATTGGTGCC Position: -160 Score: 5.5 Sequence: TGCCCCAGAATGGTGCA Locus tag: b0811 Name: glnH Funciton: Glutamine ABC transporter, substrate-binding component Locus tag: b0810 Name: glnP Funciton: Glutamine ABC transporter, transmembrane component Locus tag: b0809 Name: glnQ Funciton: Glutamine ABC transporter, ATP-binding component
	b0811	glnH	Glutamine ABC transporter, substrate-binding component
	b0810	glnP	Glutamine ABC transporter, transmembrane component
	b0809	glnQ	Glutamine ABC transporter, ATP-binding component
Position: -205 Score: 5.1 Sequence: TGAACCATCGTGGTGCA Locus tag: b1988 Name: nac Funciton: Nitrogen assimilation transcriptional regulator, LysR family
	b1988	nac	Nitrogen assimilation transcriptional regulator, LysR family
Position: -47 Score: 5.4 Sequence: CGCACCATTATGGTGCG Locus tag: b0855 Name: potG Funciton: Putrescine ABC transporter, ATP-binding component Locus tag: b0856 Name: potH Funciton: Putrescine ABC transporter, transmembrane component 2 Locus tag: b0857 Name: potI Funciton: Putrescine ABC transporter, transmembrane component 1
	b0855	potG	Putrescine ABC transporter, ATP-binding component
	b0856	potH	Putrescine ABC transporter, transmembrane component 2
	b0857	potI	Putrescine ABC transporter, transmembrane component 1
Position: -215 Score: 4.6 Sequence: TGCCCTGAAAACGTGCA Locus tag: b3073 Name: ygjG Funciton: Putrescine aminotransferase (EC 2.6.1.82)
	b3073	ygjG	Putrescine aminotransferase (EC 2.6.1.82)

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtrC in Escherichia coli str. K-12 substr. MG1655

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --