Regulog BioQ - Actinomycetales

Member of regulog collections
- By trascription factor - BioQ
- By TF family - TetR
- By effector - Biotin
- By pathway - Biotin biosynthesis
Genes | Function | |||||||||||||||||||
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CRON 1. | ||||||||||||||||||||
bioB |
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Rhodococcus opacus B4 Site: position = -88 score = 5.31711 sequence = CGTGAACACCGTTCAAC Site: position = -72 score = 5.3745 sequence = CTTGTACGGTGTTCAAT Gene: ROP_07700: biotin synthase |
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Corynebacterium amycolatum SK46 Site: position = -107 score = 4.62893 sequence = ATTGAACCCTGTTCGAC Gene: CORAM0001_1066: biotin synthase |
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Corynebacterium aurimucosum ATCC 700975 Site: position = -30 score = 5.9757 sequence = CTTGAACGGTGTTCAAG Gene: cauri_0069: biotin synthase |
*2
Corynebacterium diphtheriae NCTC 13129 Site: position = -15 score = 5.56358 sequence = ATTAAACACCGTTCAAT Gene: DIP0105: biotin synthase Site: position = -24 score = 5.37845 sequence = ATTGAAAGGTGTTCAAT Site: position = 11 score = 5.41837 sequence = ATTGAACACAGTTCAGG Gene: DIP1124: biotin synthase |
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Corynebacterium efficiens YS-314 Site: position = -38 score = 6.06981 sequence = ATTGAACACTGTTCAAT Gene: CE0089: biotin synthase |
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Corynebacterium glutamicum ATCC 13032 Site: position = -156 score = 5.09707 sequence = TTTGAACAGTGTTCAAA Site: position = -135 score = 6.06981 sequence = CTTGAACACTGTTCAAG Gene: cg0095: biotin synthase |
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Corynebacterium jeikeium K411 Site: position = -76 score = 5.44655 sequence = ACTAAACAGCGTTCAAG Gene: jk0682: biotin synthase |
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Corynebacterium kroppenstedtii DSM 44385 Site: position = -87 score = 5.95277 sequence = ATTGAACAGTGTTCAGG Gene: ckrop_0784: biotin synthase |
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Nocardia farcinica IFM 10152 Site: position = -85 score = 5.85867 sequence = CCTGAACACCGTTCAAG Gene: nfa18320: biotin synthase |
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Rhodococcus erythropolis PR4 Site: position = -58 score = 5.31711 sequence = CGTGAACACCGTTCAAC Site: position = -42 score = 5.3745 sequence = CTTGTACGGTGTTCAAT Gene: RER_34880: biotin synthase |
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Nocardioides sp. JS614 Site: position = -96 score = 5.20008 sequence = CCTGAACGCTGTTCACC Site: position = -81 score = 5.20008 sequence = CCTGAACGCTGTTCACC Site: position = -66 score = 5.20008 sequence = CCTGAACGCTGTTCACC Site: position = -51 score = 5.20008 sequence = CCTGAACGCTGTTCACC Site: position = -36 score = 5.74163 sequence = CCTGAACGCTGTTCAGG Gene: Noca_3415: biotin synthase |
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Mycobacterium sp. JLS Site: position = -110 score = 5.85867 sequence = CCTGAACGGTGTTCAAT Gene: Mjls_3090: biotin synthase |
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Mycobacterium vanbaalenii PYR-1 Site: position = -62 score = 5.85867 sequence = CCTGAACGGTGTTCAAT Gene: Mvan_2793: biotin synthase |
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Mycobacterium smegmatis str. MC2 155 Site: position = -52 score = 5.85867 sequence = CCTGAACACCGTTCAAG Site: position = -32 score = 5.43635 sequence = CCTGAACACCGTTCAGC Gene: MSMEG_3194: biotin synthase |
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*2
Brevibacterium linens BL2 Site: position = -68 score = 5.95277 sequence = ATTGAACACTGTTCAGG Gene: BlinB01003562: biotin synthase Site: position = -23 score = 5.95277 sequence = CCTGAACAGTGTTCAAT Gene: BlinB01003681: biotin synthase |
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Kocuria rhizophila DC2201 Site: position = -26 score = 5.85867 sequence = CCTGAACACCGTTCAAT Site: position = -8 score = 5.57563 sequence = ATTGAACAATGTTCAAG Gene: KRH_02440: biotin synthase |
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Propionibacterium acnes KPA171202 Site: position = 9 score = 4.959 sequence = ATTGAATCCCGTTCAAT Site: position = 26 score = 5.64753 sequence = CCTGAACGGCGTTCAGG Gene: PPA1407: biotin synthase |
biotin synthase |
bioA |
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Rhodococcus opacus B4 Site: position = -41 score = 5.67042 sequence = CTTGAACGGTGTTCAAC Gene: ROP_07830: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
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Corynebacterium amycolatum SK46 Site: position = -50 score = 4.66919 sequence = CCCGAACGTCGTTCAAG Gene: CORAM0001_1898: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
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Corynebacterium diphtheriae NCTC 13129 Site: position = -103 score = 5.9757 sequence = ATTGAACGCTGTTCAAT Site: position = -26 score = 5.56358 sequence = ATTAAACGGTGTTCAAT Gene: DIP1191: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
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Corynebacterium efficiens YS-314 Site: position = -303 score = 5.67042 sequence = GTTGAACGGTGTTCAAT Site: position = -224 score = 6.06981 sequence = ATTGAACACTGTTCAAT Gene: CE1421: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
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Corynebacterium glutamicum ATCC 13032 Site: position = -65 score = 6.06981 sequence = ATTGAACACTGTTCAAT Gene: cg2885: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
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Corynebacterium kroppenstedtii DSM 44385 Site: position = -29 score = 5.83573 sequence = ACTGAACACTGTTCAGT Gene: ckrop_0861: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
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Nocardia farcinica IFM 10152 Site: position = -60 score = 6.06981 sequence = CTTGAACACTGTTCAAG Gene: nfa18180: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
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Rhodococcus erythropolis PR4 Site: position = -37 score = 5.67042 sequence = CTTGAACACCGTTCAAC Gene: RER_35050: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
Gene: Noca_3414: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
Gene: Mjls_3095: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
Gene: Mvan_2788: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
Gene: MSMEG_3188: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
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Gene: BlinB01003680: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
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Gene: KRH_02450: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
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Propionibacterium acnes KPA171202 Site: position = -121 score = 5.95277 sequence = CCTGAACACTGTTCAAG Gene: PPA0967: adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
bioF |
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Rhodococcus opacus B4 Site: position = -24 score = 5.67042 sequence = GTTGAACACCGTTCAAG Gene: ROP_07820: 8-amino-7-oxononanoate synthase |
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Gene: DIP1382: 8-amino-7-oxononanoate synthase |
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Nocardia farcinica IFM 10152 Site: position = -31 score = 5.85867 sequence = CCTGAACGGTGTTCAAG Gene: nfa18190: 8-amino-7-oxononanoate synthase |
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Rhodococcus erythropolis PR4 Site: position = -18 score = 5.67042 sequence = GTTGAACGGTGTTCAAG Gene: RER_35040: 8-amino-7-oxononanoate synthase |
Gene: Noca_3413: 8-amino-7-oxononanoate synthase |
*
Mycobacterium sp. JLS Site: position = -43 score = 5.85867 sequence = CCTGAACGGTGTTCAAT Gene: Mjls_3094: 8-amino-7-oxononanoate synthase |
*
Mycobacterium vanbaalenii PYR-1 Site: position = -109 score = 5.44655 sequence = CCTGAACGGTGTTTAAT Gene: Mvan_2789: 8-amino-7-oxononanoate synthase |
*
Mycobacterium smegmatis str. MC2 155 Site: position = -133 score = 5.85867 sequence = CCTGAACGGTGTTCAAT Gene: MSMEG_3189: 8-amino-7-oxononanoate synthase |
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Gene: BlinB01003679: 8-amino-7-oxononanoate synthase |
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Gene: KRH_02460: 8-amino-7-oxononanoate synthase |
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8-amino-7-oxononanoate synthase |
bioD |
Gene: ROP_07810: dethiobiotin synthetase |
Gene: CORAM0001_1897: dethiobiotin synthetase |
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Gene: DIP1192: dethiobiotin synthetase |
Gene: CE1420: dethiobiotin synthetase |
Gene: cg2886: dithiobiotin synthetase |
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Gene: ckrop_0862: Dethiobiotin synthetase |
Gene: nfa18200: dethiobiotin synthetase |
Gene: RER_35030: dethiobiotin synthetase |
Gene: Noca_3412: dethiobiotin synthase |
Gene: Mjls_3093: dethiobiotin synthetase |
Gene: Mvan_2790: dethiobiotin synthetase |
Gene: MSMEG_3190: dethiobiotin synthetase |
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Gene: BlinB01003678: dethiobiotin synthetase |
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Gene: KRH_02470: dethiobiotin synthetase |
Gene: PPA0968: dethiobiotin synthetase |
dethiobiotin synthetase |
bioW |
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*
Corynebacterium diphtheriae NCTC 13129 Site: position = -20 score = 5.3524 sequence = ATTGAACACTGTTTAAC Gene: DIP1381: pimeloyl-CoA synthetase |
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pimeloyl-CoA synthetase |
bioWF |
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Corynebacterium amycolatum SK46 Site: position = -47 score = 5.4766 sequence = CTTGAACAGTGTTAAAG Gene: CORAM0001_0217: pimeloyl-CoA synthetase/8-amino-7-oxononanoate synthase |
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Gene: ckrop_1506: pimeloyl-CoA synthetase/8-amino-7-oxononanoate synthase |
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*
Propionibacterium acnes KPA171202 Site: position = -50 score = 5.49339 sequence = ATTGAATGGTGTTCAAT Gene: PPA1866: pimeloyl-CoA synthetase/8-amino-7-oxononanoate synthase |
pimeloyl-CoA synthetase/8-amino-7-oxononanoate synthase |
CRON 2. | ||||||||||||||||||||
bioQ |
*
Rhodococcus opacus B4 Site: position = -99 score = 5.3745 sequence = ATTGAACACCGTACAAG Site: position = -83 score = 5.31711 sequence = GTTGAACGGTGTTCACG Gene: ROP_07710: biotin repressor, TetR family |
Gene: CORAM0001_1067: biotin repressor, TetR family |
Gene: cauri_1629: biotin repressor, TetR family |
Gene: DIP1571: biotin repressor, TetR family |
Gene: CE2009: biotin repressor, TetR family |
Gene: cg2309: biotin repressor, TetR family |
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Gene: ckrop_0781: biotin repressor, TetR family |
*
Nocardia farcinica IFM 10152 Site: position = -65 score = 5.85867 sequence = CTTGAACGGTGTTCAGG Gene: nfa18310: biotin repressor, TetR family |
*
Rhodococcus erythropolis PR4 Site: position = -124 score = 5.3745 sequence = ATTGAACACCGTACAAG Site: position = -108 score = 5.31711 sequence = GTTGAACGGTGTTCACG Gene: RER_34890: biotin repressor, TetR family |
*
Nocardioides sp. JS614 Site: position = -95 score = 5.14043 sequence = CCTGAACGGTGGTCAGG Site: position = -80 score = 5.20008 sequence = GGTGAACGGTGTTCAGG Gene: Noca_3348: biotin repressor, TetR family |
*
Mycobacterium sp. JLS Site: position = -30 score = 5.85867 sequence = ATTGAACACCGTTCAGG Gene: Mjls_3091: biotin repressor, TetR family |
*
Mycobacterium vanbaalenii PYR-1 Site: position = -30 score = 5.85867 sequence = ATTGAACACCGTTCAGG Gene: Mvan_2792: biotin repressor, TetR family |
*
Mycobacterium smegmatis str. MC2 155 Site: position = -50 score = 5.43635 sequence = GCTGAACGGTGTTCAGG Site: position = -30 score = 5.85867 sequence = CTTGAACGGTGTTCAGG Gene: MSMEG_3193: biotin repressor, TetR family |
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -47 score = 4.7059 sequence = CCTGAACGATGTTCACC Site: position = -32 score = 5.41126 sequence = CCTGAACGGCGTTCACT Gene: CMM_1624: biotin repressor, TetR family |
Gene: BlinB01000973: biotin repressor, TetR family |
*
Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -43 score = 5.20008 sequence = ACTGAACGGTGTTCACC Site: position = -28 score = 5.50536 sequence = CCTGAACAGCGTTCACT Gene: Lxx20890: biotin repressor, TetR family |
*
Kocuria rhizophila DC2201 Site: position = -271 score = 5.57563 sequence = CTTGAACATTGTTCAAT Site: position = -253 score = 5.85867 sequence = ATTGAACGGTGTTCAGG Gene: KRH_02430: biotin repressor, TetR family |
*
Propionibacterium acnes KPA171202 Site: position = -55 score = 5.64753 sequence = CCTGAACGCCGTTCAGG Site: position = -38 score = 4.959 sequence = ATTGAACGGGATTCAAT Gene: PPA1406: biotin repressor, TetR family |
biotin repressor, TetR family |
CRON 3. | ||||||||||||||||||||
bioY |
*2
Rhodococcus opacus B4 Site: position = -38 score = 5.38742 sequence = CTTGAACGTCGTTCAAG Gene: ROP_53000: Substrate-specific component BioY of biotin ECF transporter Site: position = -38 score = 5.38742 sequence = CTTGAACGTCGTTCAAG Gene: ROP_52960: Substrate-specific component BioY of biotin ECF transporter |
*
Corynebacterium amycolatum SK46 Site: position = -30 score = 5.04629 sequence = CCTGAACAGTGCTCAAC Gene: CORAM0001_0836: Substrate-specific component BioY of biotin ECF transporter |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = 3 score = 5.58344 sequence = CTTGAACAGTGTTCAAA Gene: cauri_1503: Substrate-specific component BioY of biotin ECF transporter |
Gene: DIP1452: Substrate-specific component BioY of biotin ECF transporter |
*
Corynebacterium efficiens YS-314 Site: position = -30 score = 4.59085 sequence = GTTTAACACCGTTCAAA Site: position = 2 score = 5.55339 sequence = GTTGAACGGTGTTCAGT Gene: CE1851: Substrate-specific component BioY of biotin ECF transporter |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -63 score = 4.95494 sequence = CATGAACGCTGTTCAAA Site: position = -31 score = 5.64749 sequence = GTTGAACACTGTTCAGG Gene: cg2147: Substrate-specific component BioY of biotin ECF transporter |
*
Corynebacterium jeikeium K411 Site: position = -39 score = 6.06981 sequence = ATTGAACAGTGTTCAAG Gene: jk1118: Substrate-specific component BioY of biotin ECF transporter |
Gene: ckrop_1114: Substrate-specific component BioY of biotin ECF transporter |
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Gene: RER_27460: Substrate-specific component BioY of biotin ECF transporter |
*
Nocardioides sp. JS614 Site: position = -54 score = 5.20008 sequence = CCTGAACACCGTTCACC Site: position = -39 score = 5.14043 sequence = CCTGACCACCGTTCAGG Gene: Noca_3349: Substrate-specific component BioY of biotin ECF transporter |
Gene: Mjls_5660: Substrate-specific component BioY of biotin ECF transporter |
Gene: Mvan_3228: Substrate-specific component BioY of biotin ECF transporter |
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*
Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -65 score = 5.41126 sequence = AGTGAACGCCGTTCAGG Site: position = -50 score = 4.7059 sequence = GGTGAACATCGTTCAGG Gene: CMM_1625: Substrate-specific component BioY of biotin ECF transporter |
*
Brevibacterium linens BL2 Site: position = -21 score = 5.83573 sequence = CCTGAACAGTGTTCAGT Gene: BlinB01002267: Substrate-specific component BioY of biotin ECF transporter |
*
Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -44 score = 5.50536 sequence = AGTGAACGCTGTTCAGG Site: position = -29 score = 5.20008 sequence = GGTGAACACCGTTCAGT Gene: Lxx20880: Substrate-specific component BioY of biotin ECF transporter |
Gene: KRH_12340: Substrate-specific component BioY of biotin ECF transporter |
*
Propionibacterium acnes KPA171202 Site: position = -75 score = 5.85867 sequence = ACTGAACGGTGTTCAAT Gene: PPA1400: Substrate-specific component BioY of biotin ECF transporter |
Substrate-specific component BioY of biotin ECF transporter |
yhfT |
3
Rhodococcus opacus B4 Gene: ROP_52970: hypothetical protein Gene: ROP_53050: putative acid--CoA ligase Gene: ROP_53010: hypothetical protein |
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Gene: Lxx20870: Long-chain-fatty-acid--CoA ligase |
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putative acid--CoA ligase |
yhfS |
2
Rhodococcus opacus B4 Gene: ROP_52980: probable beta-ketoadipyl-CoA thiolase Gene: ROP_53020: acetyl-CoA acetyltransferase |
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Gene: Lxx20900: 3-ketoacyl-CoA thiolase |
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acetyl-CoA acetyltransferase |
bioM |
Gene: ROP_53030: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: CORAM0001_0835: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: cauri_1504: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: DIP1453: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: CE1852: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: cg2148: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: jk1119: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: ckrop_1115: ATPase component BioM of energizing module of biotin ECF transporter |
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Gene: RER_27450: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: Noca_3350: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: Mjls_5659: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: Mvan_3227: ATPase component BioM of energizing module of biotin ECF transporter |
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Gene: CMM_1626: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: BlinB01002268: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: Lxx20910: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: KRH_12330: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: PPA1399: ATPase component BioM of energizing module of biotin ECF transporter |
ATPase component BioM of energizing module of biotin ECF transporter |
bioN |
Gene: ROP_53040: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: CORAM0001_0834: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: cauri_1505: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: DIP1454: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: CE1853: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: cg2149: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: jk1120: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: ckrop_1116: Transmembrane component BioN of energizing module of biotin ECF transporter |
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Gene: RER_27440: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: Noca_3351: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: Mjls_5658: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: Mvan_3226: Transmembrane component BioN of energizing module of biotin ECF transporter |
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Gene: CMM_1627: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: BlinB01002269: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: Lxx20920: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: KRH_12320: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: PPA1398: Transmembrane component BioN of energizing module of biotin ECF transporter |
Transmembrane component BioN of energizing module of biotin ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |