Regulog HutC - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Histidine utilization |
| Effector: | cis-Urocanic acid |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By trascription factor - HutC
- By TF family - GntR/Others
- By effector - cis-Urocanic acid
- By pathway - Histidine utilization
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | 13 | 3 |
| Ralstonia eutropha H16 | 12 | 3 |
| Ralstonia eutropha JMP134 | 15 | 4 |
| Ralstonia metallidurans CH34 | 14 | 3 |
| Ralstonia pickettii 12J | 7 | 3 |
| Ralstonia solanacearum GMI1000 | 5 | 2 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| hutH |
*
Cupriavidus taiwanensis Site: position = -26 score = 5.62207 sequence = TAAGCTGTATAGACAGGAAC Gene: RALTA_A2492: Histidine ammonia-lyase (EC 4.3.1.3) |
*
Ralstonia eutropha H16 Site: position = -26 score = 5.62207 sequence = TAAGCTGTATAGACAGGAAC Gene: H16_A3018: Histidine ammonia-lyase (EC 4.3.1.3) |
*2
Ralstonia eutropha JMP134 Gene: Reut_B5637: Histidine ammonia-lyase (EC 4.3.1.3) Site: position = -40 score = 5.62207 sequence = TAAGCTGTATAGACAGGAAC Gene: Reut_A2716: Histidine ammonia-lyase (EC 4.3.1.3) |
*2
Ralstonia metallidurans CH34 Gene: Rmet_5047: Histidine ammonia-lyase (EC 4.3.1.3) Site: position = -59 score = 5.08975 sequence = TAACCTGTATAGACAGGCCC Gene: Rmet_2855: Histidine ammonia-lyase (EC 4.3.1.3) |
Gene: Rpic_2880: Histidine ammonia-lyase (EC 4.3.1.3) |
Gene: RSc2646: Histidine ammonia-lyase (EC 4.3.1.3) |
Histidine ammonia-lyase (EC 4.3.1.3) |
| hutU |
*2
Cupriavidus taiwanensis Gene: RALTA_A2491: Urocanate hydratase (EC 4.2.1.49) Site: position = -83 score = 5.55162 sequence = GCACTTGTATATACAGGAAT Gene: RALTA_A0654: Urocanate hydratase (EC 4.2.1.49) |
*2
Ralstonia eutropha H16 Site: position = -83 score = 5.40951 sequence = ATGCCTGTATATACAGGACT Gene: H16_A0695: Urocanate hydratase (EC 4.2.1.49) Gene: H16_A3017: Urocanate hydratase (EC 4.2.1.49) |
*3
Ralstonia eutropha JMP134 Gene: Reut_A2715: Urocanate hydratase (EC 4.2.1.49) Site: position = -94 score = 5.59118 sequence = ATGCTTGTATATACAACACT Gene: Reut_A0896: Urocanate hydratase (EC 4.2.1.49) Site: position = -94 score = 5.59118 sequence = ATGCTTGTATATACAACACT Gene: Reut_B5636: Urocanate hydratase (EC 4.2.1.49) |
*2
Ralstonia metallidurans CH34 Site: position = -88 score = 4.73014 sequence = CAACTTGTCTATACAATACT Gene: Rmet_5048: Urocanate hydratase (EC 4.2.1.49) Gene: Rmet_2854: Urocanate hydratase (EC 4.2.1.49) |
*
Ralstonia pickettii 12J Site: position = -60 score = 6.10331 sequence = TAAGTTGTATATACAACATA Gene: Rpic_2881: Urocanate hydratase (EC 4.2.1.49) |
*
Ralstonia solanacearum GMI1000 Site: position = -53 score = 5.78373 sequence = TTATTTGTATATACAACATA Gene: RSc2647: Urocanate hydratase (EC 4.2.1.49) |
Urocanate hydratase (EC 4.2.1.49) |
| hutD |
Gene: RALTA_A2490: Conserved hypothetical protein related to histidine degradation |
Gene: H16_A3016: Conserved hypothetical protein related to histidine degradation |
Gene: Reut_A2714: Conserved hypothetical protein related to histidine degradation |
Gene: Rmet_2853: Conserved hypothetical protein related to histidine degradation |
|
|
Conserved hypothetical protein related to histidine degradation |
| hutI |
Gene: RALTA_A2489: Imidazolonepropionase (EC 3.5.2.7) |
Gene: H16_A3015: Imidazolonepropionase (EC 3.5.2.7) |
Gene: Reut_A2713: Imidazolonepropionase (EC 3.5.2.7) |
Gene: Rmet_2852: Imidazolonepropionase (EC 3.5.2.7) |
Gene: Rpic_2878: Imidazolonepropionase (EC 3.5.2.7) |
Gene: RSc2644: Imidazolonepropionase (EC 3.5.2.7) |
Imidazolonepropionase (EC 3.5.2.7) |
| hutF |
Gene: RALTA_A2488: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
Gene: H16_A3014: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
Gene: Reut_A2712: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
Gene: Rmet_2851: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
|
|
Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
| hutG |
Gene: RALTA_A2487: N-formylglutamate deformylase (EC 3.5.1.68) |
Gene: H16_A3013: N-formylglutamate deformylase (EC 3.5.1.68) |
Gene: Reut_A2711: N-formylglutamate deformylase (EC 3.5.1.68) |
Gene: Rmet_2850: N-formylglutamate deformylase (EC 3.5.1.68) |
|
|
N-formylglutamate deformylase (EC 3.5.1.68) |
| hutG2 |
2
Cupriavidus taiwanensis Gene: RALTA_A0652: Formiminoglutamase (EC 3.5.3.8) Gene: RALTA_A0010: Formiminoglutamase (EC 3.5.3.8) |
Gene: H16_A0044: Formiminoglutamase (EC 3.5.3.8) |
Gene: Reut_A1591: Formiminoglutamase (EC 3.5.3.8) |
Gene: Rmet_5045: Formiminoglutamase (EC 3.5.3.8) |
2
Ralstonia pickettii 12J Gene: Rpic_2879: Formiminoglutamase (EC 3.5.3.8) Gene: Rpic_2795: Formiminoglutamase (EC 3.5.3.8) |
Gene: RS04571: Formiminoglutamase (EC 3.5.3.8) |
Formiminoglutamase (EC 3.5.3.8) |
| hisT |
|
|
Gene: Reut_B5638: Histidine transport protein (permease) |
Gene: Rmet_5046: Histidine transport protein (permease) |
*
Ralstonia pickettii 12J Site: position = -126 score = 5.53292 sequence = CATGATGTATATACAACAAC Gene: Rpic_0834: Histidine transport protein (permease) |
|
Histidine transport protein (permease) |
| COG2814 (AraJ) |
Gene: RALTA_A0653: Putative histidine permease, major facilitator superfamily |
Gene: H16_A0694: Putative histidine permease, major facilitator superfamily |
3
Ralstonia eutropha JMP134 Gene: Reut_B5304: Putative histidine permease, major facilitator superfamily Gene: Reut_C6354: Putative histidine permease, major facilitator superfamily Gene: Reut_A0897: Putative histidine permease, major facilitator superfamily |
|
Gene: Rpic_0835: Putative histidine permease, major facilitator superfamily |
|
Putative histidine permease, major facilitator superfamily |
| CRON 2. | |||||||
| hisX |
*
Cupriavidus taiwanensis Site: position = -247 score = 5.65278 sequence = GATCCTGTCTATACAGCAAC Site: position = -93 score = 5.43936 sequence = TGACTTGTATATACAGGCAT Gene: RALTA_A2496: Putative histidine ABC transporter, substrate binding protein |
*
Ralstonia eutropha H16 Site: position = -93 score = 5.60807 sequence = TGACTTGTATATACAGGTAC Site: position = -249 score = 5.20991 sequence = TGTCCTGTCTATACAGCAGC Gene: H16_A3022: Putative histidine ABC transporter, substrate binding protein |
*
Ralstonia eutropha JMP134 Site: position = -94 score = 5.67179 sequence = TGACTTGTATATACAGGATT Site: position = -249 score = 5.37126 sequence = ACTCCTGTCTATACAGCAAC Gene: Reut_A2720: Putative histidine ABC transporter, substrate binding protein |
*
Ralstonia metallidurans CH34 Site: position = -114 score = 5.21767 sequence = TGACTTGTATATACAGCGTT Site: position = -271 score = 5.83693 sequence = CTTGTTGTATATACAGCAAT Gene: Rmet_2859: Putative histidine ABC transporter, substrate binding protein |
|
|
Putative histidine ABC transporter, substrate binding protein |
| hisY |
Gene: RALTA_A2495: Putative histidine ABC transporter, permease protein |
Gene: H16_A3021: Putative histidine ABC transporter, permease protein |
Gene: Reut_A2719: Putative histidine ABC transporter, permease protein |
Gene: Rmet_2858: Putative histidine ABC transporter, permease protein |
|
|
Putative histidine ABC transporter, permease protein |
| hisZ |
Gene: RALTA_A2494: Putative histidine ABC transporter, ATPase protein |
Gene: H16_A3020: Putative histidine ABC transporter, ATPase protein |
Gene: Reut_A2718: Putative histidine ABC transporter, ATPase protein |
Gene: Rmet_2857: Putative histidine ABC transporter, ATPase protein |
|
|
Putative histidine ABC transporter, ATPase protein |
| hutC |
Gene: RALTA_A2493: Histidine utilization repressor, GntR family |
Gene: H16_A3019: Histidine utilization repressor, GntR family |
Gene: Reut_A2717: Histidine utilization repressor, GntR family |
Gene: Rmet_2856: Histidine utilization repressor, GntR family |
|
|
Histidine utilization repressor, GntR family |
| CRON 3. | |||||||
| hutC |
|
|
|
|
*
Ralstonia pickettii 12J Site: position = -114 score = 6.10331 sequence = TATGTTGTATATACAACTTA Gene: Rpic_2882: Histidine utilization repressor, GntR family |
*
Ralstonia solanacearum GMI1000 Site: position = -99 score = 5.78373 sequence = TATGTTGTATATACAAATAA Gene: RSc2648: Histidine utilization repressor, GntR family |
Histidine utilization repressor, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |