Regulog HutC - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Histidine utilization
Effector:	cis-Urocanic acid
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 25 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - HutC
By TF family - GntR/Others
By effector - cis-Urocanic acid
By pathway - Histidine utilization

Statistics of regulated genes
Genome	Genes	Operons
Pseudoalteromonas atlantica T6c	5	2
Pseudoalteromonas haloplanktis TAC125	4	2
Pseudoalteromonas tunicata D2	2	2
Idiomarina loihiensis L2TR	12	3
Idiomarina baltica OS145	4	2
Alteromonas macleodii 'Deep ecotype'	5	2
Alteromonadales bacterium TW-7	4	2
Colwellia psychrerythraea 34H	17	5
Glaciecola sp. HTCC2999

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
hutI	* Pseudoalteromonas atlantica T6c Site: position = -50 score = 5.67686 sequence = ATACAAGTATGTACAAGTAA Site: position = -60 score = 6.51905 sequence = AAACTTGTATATACAAGTAT Gene: Patl_1019: Imidazolonepropionase (EC 3.5.2.7)	* Pseudoalteromonas haloplanktis TAC125 Site: position = -70 score = 5.32919 sequence = TACCTTGTATATACAAGATG Gene: PSHAa2737: Imidazolonepropionase (EC 3.5.2.7)	* Pseudoalteromonas tunicata D2 Site: position = -68 score = 5.06762 sequence = AGTATTGTATATACAAGCCG Gene: PTD2_07454: Imidazolonepropionase (EC 3.5.2.7)	* Idiomarina loihiensis L2TR Site: position = -62 score = 6.12134 sequence = ATAATTGTATATACAAGCAG Gene: IL2453: Imidazolonepropionase (EC 3.5.2.7)	* Idiomarina baltica OS145 Site: position = -77 score = 4.34636 sequence = TCATTTGTCTATACAACCTG Gene: OS145_09068: Imidazolonepropionase (EC 3.5.2.7)	* Alteromonas macleodii 'Deep ecotype' Site: position = -101 score = 6.74667 sequence = ATACTTGTATATACAAGTAT Site: position = -91 score = 4.87724 sequence = ATACAAGTATGCACAAGTAC Gene: MADE_03129: Imidazolonepropionase (EC 3.5.2.7)	* Alteromonadales bacterium TW-7 Site: position = -69 score = 4.7575 sequence = CCTCTTGTATATACAAGATG Gene: ATW7_17853: Imidazolonepropionase (EC 3.5.2.7)	* Colwellia psychrerythraea 34H Site: position = -153 score = 5.49192 sequence = AGAGTTGTATATACAAGTTG Gene: CPS_0911: Imidazolonepropionase (EC 3.5.2.7)	Glaciecola sp. HTCC2999	Imidazolonepropionase (EC 3.5.2.7)
hutG2	Pseudoalteromonas atlantica T6c Gene: Patl_1018: Formiminoglutamase (EC 3.5.3.8)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03130: Formiminoglutamase (EC 3.5.3.8)	Alteromonadales bacterium TW-7	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Formiminoglutamase (EC 3.5.3.8)

CRON 2.
hisG	Pseudoalteromonas atlantica T6c Gene: Patl_2880: ATP phosphoribosyltransferase (EC 2.4.2.17)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0494: ATP phosphoribosyltransferase (EC 2.4.2.17)	Pseudoalteromonas tunicata D2 Gene: PTD2_02256: ATP phosphoribosyltransferase (EC 2.4.2.17)	* Idiomarina loihiensis L2TR Site: position = -301 score = 4.37103 sequence = TTATTTGACTATACAACCAC Gene: IL1834: ATP phosphoribosyltransferase (EC 2.4.2.17)	Idiomarina baltica OS145 Gene: OS145_10250: ATP phosphoribosyltransferase (EC 2.4.2.17)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01118: ATP phosphoribosyltransferase (EC 2.4.2.17)	Alteromonadales bacterium TW-7 Gene: ATW7_00290: ATP phosphoribosyltransferase (EC 2.4.2.17)	* Colwellia psychrerythraea 34H Site: position = -54 score = 5.00432 sequence = TAAATTGTATATACATGACG Gene: CPS_3889: ATP phosphoribosyltransferase (EC 2.4.2.17)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100009696: ATP phosphoribosyltransferase (EC 2.4.2.17)	ATP phosphoribosyltransferase (EC 2.4.2.17)
hisD	Pseudoalteromonas atlantica T6c Gene: Patl_2881: Histidinol dehydrogenase (EC 1.1.1.23)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0493: Histidinol dehydrogenase (EC 1.1.1.23)	Pseudoalteromonas tunicata D2 Gene: PTD2_02261: Histidinol dehydrogenase (EC 1.1.1.23)	Idiomarina loihiensis L2TR Gene: IL1835: Histidinol dehydrogenase (EC 1.1.1.23)	Idiomarina baltica OS145 Gene: OS145_10245: Histidinol dehydrogenase (EC 1.1.1.23)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01117: Histidinol dehydrogenase (EC 1.1.1.23)	Alteromonadales bacterium TW-7 Gene: ATW7_00285: Histidinol dehydrogenase (EC 1.1.1.23)	Colwellia psychrerythraea 34H Gene: CPS_3890: Histidinol dehydrogenase (EC 1.1.1.23)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100009701: Histidinol dehydrogenase (EC 1.1.1.23)	Histidinol dehydrogenase (EC 1.1.1.23)
hisC	Pseudoalteromonas atlantica T6c Gene: Patl_2882: Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0492: Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Pseudoalteromonas tunicata D2 Gene: PTD2_02266: Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Idiomarina loihiensis L2TR Gene: IL1836: Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Idiomarina baltica OS145 Gene: OS145_10240: Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01116: Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Alteromonadales bacterium TW-7 Gene: ATW7_00280: Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Colwellia psychrerythraea 34H Gene: CPS_3891: Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100009706: Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Histidinol-phosphate aminotransferase (EC 2.6.1.9)
hisB	Pseudoalteromonas atlantica T6c Gene: Patl_2883: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0491: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Pseudoalteromonas tunicata D2 Gene: PTD2_02271: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Idiomarina loihiensis L2TR Gene: IL1837: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Idiomarina baltica OS145 Gene: OS145_10235: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01115: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Alteromonadales bacterium TW-7 Gene: ATW7_00275: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Colwellia psychrerythraea 34H Gene: CPS_3892: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100009711: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
hisH	Pseudoalteromonas atlantica T6c Gene: Patl_2884: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0490: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Pseudoalteromonas tunicata D2 Gene: PTD2_02276: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Idiomarina loihiensis L2TR Gene: IL1838: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Idiomarina baltica OS145 Gene: OS145_10230: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01114: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Alteromonadales bacterium TW-7 Gene: ATW7_00270: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Colwellia psychrerythraea 34H Gene: CPS_3893: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100009716: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
hisA	Pseudoalteromonas atlantica T6c Gene: Patl_2885: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0489: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Pseudoalteromonas tunicata D2 Gene: PTD2_02281: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Idiomarina loihiensis L2TR Gene: IL1839: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Idiomarina baltica OS145 Gene: OS145_10225: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01113: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Alteromonadales bacterium TW-7 Gene: ATW7_00265: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Colwellia psychrerythraea 34H Gene: CPS_3894: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100009721: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
hisF	Pseudoalteromonas atlantica T6c Gene: Patl_2887: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0483: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Pseudoalteromonas tunicata D2 Gene: PTD2_02286: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Idiomarina loihiensis L2TR Gene: IL1840: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Idiomarina baltica OS145 Gene: OS145_10220: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01112: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Alteromonadales bacterium TW-7 Gene: ATW7_00260: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Colwellia psychrerythraea 34H Gene: CPS_3895: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100009726: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
hisI	Pseudoalteromonas atlantica T6c Gene: Patl_2888: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0482: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Pseudoalteromonas tunicata D2 Gene: PTD2_02291: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Idiomarina loihiensis L2TR Gene: IL1841: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Idiomarina baltica OS145 Gene: OS145_10215: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	2 Alteromonas macleodii 'Deep ecotype' Gene: MADE_01111: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) Gene: MADE_02956: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Alteromonadales bacterium TW-7 Gene: ATW7_00255: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Colwellia psychrerythraea 34H Gene: CPS_3896: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100009731: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)

CRON 3.
hutC	* Pseudoalteromonas atlantica T6c Site: position = -66 score = 5.67686 sequence = TTACTTGTACATACTTGTAT Site: position = -56 score = 6.51905 sequence = ATACTTGTATATACAAGTTT Gene: Patl_1020: Histidine utilization repressor, GntR family	* Pseudoalteromonas haloplanktis TAC125 Site: position = -70 score = 5.32919 sequence = CATCTTGTATATACAAGGTA Gene: PSHAa2738: Histidine utilization repressor, GntR family	* Pseudoalteromonas tunicata D2 Site: position = -69 score = 5.06762 sequence = CGGCTTGTATATACAATACT Gene: PTD2_07449: Histidine utilization repressor, GntR family	* Idiomarina loihiensis L2TR Site: position = -81 score = 6.12134 sequence = CTGCTTGTATATACAATTAT Gene: IL2452: Histidine utilization repressor, GntR family	* Idiomarina baltica OS145 Site: position = -70 score = 4.34636 sequence = CAGGTTGTATAGACAAATGA Gene: OS145_09063: Histidine utilization repressor, GntR family	* Alteromonas macleodii 'Deep ecotype' Site: position = -89 score = 4.87724 sequence = GTACTTGTGCATACTTGTAT Site: position = -79 score = 6.74667 sequence = ATACTTGTATATACAAGTAT Gene: MADE_03128: Histidine utilization repressor, GntR family	* Alteromonadales bacterium TW-7 Site: position = -71 score = 4.7575 sequence = CATCTTGTATATACAAGAGG Gene: ATW7_17848: Histidine utilization repressor, GntR family	* Colwellia psychrerythraea 34H Site: position = -80 score = 5.49192 sequence = CAACTTGTATATACAACTCT Gene: CPS_0910: Histidine utilization repressor, GntR family	Glaciecola sp. HTCC2999	Histidine utilization repressor, GntR family
hutU	Pseudoalteromonas atlantica T6c Gene: Patl_1021: Urocanate hydratase (EC 4.2.1.49)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa2739: Urocanate hydratase (EC 4.2.1.49)	Pseudoalteromonas tunicata D2 Gene: PTD2_14952: Urocanate hydratase (EC 4.2.1.49)	Idiomarina loihiensis L2TR Gene: IL2451: Urocanate hydratase (EC 4.2.1.49)	Idiomarina baltica OS145 Gene: OS145_09058: Urocanate hydratase (EC 4.2.1.49)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03127: Urocanate hydratase (EC 4.2.1.49)	* Alteromonadales bacterium TW-7 Site: position = -28 score = 4.29997 sequence = CACCTTGTATATACAACAGG Gene: ATW7_17843: Urocanate hydratase (EC 4.2.1.49)	Colwellia psychrerythraea 34H Gene: CPS_0909: Urocanate hydratase (EC 4.2.1.49)	Glaciecola sp. HTCC2999	Urocanate hydratase (EC 4.2.1.49)
hutH	Pseudoalteromonas atlantica T6c Gene: Patl_1022: Histidine ammonia-lyase (EC 4.3.1.3)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa2740: Histidine ammonia-lyase (EC 4.3.1.3)	Pseudoalteromonas tunicata D2 Gene: PTD2_14947: Histidine ammonia-lyase (EC 4.3.1.3)	Idiomarina loihiensis L2TR Gene: IL2450: Histidine ammonia-lyase (EC 4.3.1.3)	Idiomarina baltica OS145 Gene: OS145_09053: Histidine ammonia-lyase (EC 4.3.1.3)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03126: Histidine ammonia-lyase (EC 4.3.1.3)	Alteromonadales bacterium TW-7 Gene: ATW7_17838: Histidine ammonia-lyase (EC 4.3.1.3)	Colwellia psychrerythraea 34H Gene: CPS_0908: Histidine ammonia-lyase (EC 4.3.1.3)	Glaciecola sp. HTCC2999	Histidine ammonia-lyase (EC 4.3.1.3)

CRON 4.
hutX	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Alteromonas macleodii 'Deep ecotype'	Alteromonadales bacterium TW-7	* Colwellia psychrerythraea 34H Site: position = -192 score = 3.84154 sequence = GAGCGGGTATATACATAAAT Gene: CPS_4933: Amino acid ABC transporter, periplasmic amino acid-binding protein	Glaciecola sp. HTCC2999	Amino acid ABC transporter, periplasmic amino acid-binding protein
hutW	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Alteromonas macleodii 'Deep ecotype'	Alteromonadales bacterium TW-7	Colwellia psychrerythraea 34H Gene: CPS_4934: L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)	Glaciecola sp. HTCC2999	L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)
hutV	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Alteromonas macleodii 'Deep ecotype'	Alteromonadales bacterium TW-7	Colwellia psychrerythraea 34H Gene: CPS_4935: L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1)	Glaciecola sp. HTCC2999	L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1)

CRON 5.
hutG	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Alteromonas macleodii 'Deep ecotype'	Alteromonadales bacterium TW-7	* Colwellia psychrerythraea 34H Site: position = -46 score = 5.1136 sequence = CAAGTTGTATATACAATTTG Gene: CPS_4353: N-formylglutamate deformylase (EC 3.5.1.68)	Glaciecola sp. HTCC2999	N-formylglutamate deformylase (EC 3.5.1.68)
hutF	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Alteromonas macleodii 'Deep ecotype'	Alteromonadales bacterium TW-7	Colwellia psychrerythraea 34H Gene: CPS_4352: Formiminoglutamic iminohydrolase (EC 3.5.3.13)	Glaciecola sp. HTCC2999	Formiminoglutamic iminohydrolase (EC 3.5.3.13)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog HutC - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --