Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NrdR - Bifidobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 31 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bifidobacterium adolescentis ATCC 15703 2 1
Bifidobacterium angulatum DSM 20098 2 1
Bifidobacterium animalis subsp. lactis AD011 6 2
Bifidobacterium bifidum NCIMB 41171 6 2
Bifidobacterium breve DSM 20213 6 2
Bifidobacterium dentium Bd1 3 2
Bifidobacterium gallicum DSM 20093 2 1
Bifidobacterium longum NCC2705 6 2
Bifidobacterium longum subsp. infantis ATCC 15697 6 2
Gardnerella vaginalis 409-05 6 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdD
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -113
score = 4.66462
sequence = ACACTACATTTAGTGC

Gene: BAD_1216: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Bifidobacterium angulatum DSM 20098

Site:
position = -129
score = 4.0327
sequence = ACACTAGCCCTAGTGT

Site:
position = -98
score = 4.49552
sequence = GAACTATATGTAGGGG

Gene: BIFANG_00874: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -119
score = 4.86322
sequence = GTACTACATCTAGTGT

Site:
position = -151
score = 4.16114
sequence = GCACAACATGTTGGTC

Gene: BLA_0521: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Bifidobacterium bifidum NCIMB 41171

Site:
position = -124
score = 5.23669
sequence = CCACTATATCTAGGGG

Gene: BbifN4_010100001805: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Bifidobacterium breve DSM 20213

Site:
position = -174
score = 3.90361
sequence = CCACTATAAATAGTTC

Site:
position = -142
score = 5.08699
sequence = ACACTAGATATAGGGG

Gene: BIFBRE_00457: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Bifidobacterium dentium Bd1

Site:
position = -112
score = 4.83701
sequence = CTACTAGATATAGTGC

Gene: BDP_1694: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Bifidobacterium gallicum DSM 20093

Site:
position = -144
score = 4.112
sequence = CCACCATATCTAGTCA

Site:
position = -113
score = 4.46434
sequence = GAACTAGATATAGGGG

Gene: BIFGAL_00567: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Bifidobacterium longum NCC2705

Site:
position = -174
score = 3.59348
sequence = ACCCTATAAATAGTTC

Site:
position = -142
score = 5.0258
sequence = GCACTAGATATAGGGG

Gene: BL1752: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -174
score = 3.59348
sequence = ACCCTATAAATAGTTC

Site:
position = -142
score = 5.18622
sequence = GCACTAGATATAGTGG

Gene: Blon_0612: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Gardnerella vaginalis 409-05

Site:
position = -116
score = 4.6652
sequence = GCCCTAGATATTGTGC

Site:
position = -148
score = 4.13059
sequence = TCACTATATATAGGTG

Gene: HMPREF0424_1125: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
nrdG
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_1215: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_00875: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_0520: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100001810: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00458: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Bifidobacterium dentium Bd1

Gene: BDP_1693: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_00566: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Bifidobacterium longum NCC2705

Gene: BL1753: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_0613: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_1124: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
CRON 2.
nrdH
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -88
score = 5.42333
sequence = ACACTAGATGTAGTGG

Site:
position = -56
score = 3.73899
sequence = ACACAAGGTATTGTTT

Gene: BLA_0313: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Bifidobacterium bifidum NCIMB 41171

Site:
position = -121
score = 4.87869
sequence = ACACTACATATAGTGA

Site:
position = -89
score = 4.23922
sequence = ACACGACTTGTAGGGG

Gene: BbifN4_010100007467: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Bifidobacterium breve DSM 20213

Site:
position = -75
score = 4.52553
sequence = CCACTATATCTAGGTT

Site:
position = -43
score = 5.2174
sequence = CCACTACATATAGTGC

Gene: BIFBRE_00660: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Bifidobacterium dentium Bd1

Site:
position = -94
score = 4.7426
sequence = CCACTACAGGTAGTGT

Site:
position = -126
score = 4.71165
sequence = CCACTATATGCAGTGG

Gene: BDP_0182: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
 
Bifidobacterium gallicum DSM 20093
*
Bifidobacterium longum NCC2705

Site:
position = -75
score = 4.2154
sequence = ACCCTATATCTAGGTT

Site:
position = -43
score = 5.2174
sequence = CCACTACATATAGTGC

Gene: BL0668: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -123
score = 4.12563
sequence = TCACTATATCTAGGTT

Site:
position = -91
score = 5.2174
sequence = CCACTACATATAGTGC

Gene: Blon_2480: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Gardnerella vaginalis 409-05

Site:
position = -129
score = 4.14131
sequence = TAACTATATATAGTGT

Site:
position = -97
score = 4.46507
sequence = CCACTATAAATAGTGC

Gene: HMPREF0424_0179: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
nrdI
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_0312: Ribonucleotide reduction protein NrdI
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100007462: Ribonucleotide reduction protein NrdI
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00659: Ribonucleotide reduction protein NrdI
 
Bifidobacterium dentium Bd1
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705

Gene: BL0669: Ribonucleotide reduction protein NrdI
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_2479: Ribonucleotide reduction protein NrdI
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_0178: Ribonucleotide reduction protein NrdI
Ribonucleotide reduction protein NrdI
nrdE
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_0311: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100007457: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00658: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Bifidobacterium dentium Bd1
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705

Gene: BL0670: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_2478: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_0177: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
nrdF
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_0310: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100007452: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00657: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Bifidobacterium dentium Bd1
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705

Gene: BL0671: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_2477: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_0176: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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