Regulog NrdR - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By taxonomy - Bifidobacteriaceae
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium adolescentis ATCC 15703 | 2 | 1 |
| Bifidobacterium angulatum DSM 20098 | 2 | 1 |
| Bifidobacterium animalis subsp. lactis AD011 | 6 | 2 |
| Bifidobacterium bifidum NCIMB 41171 | 6 | 2 |
| Bifidobacterium breve DSM 20213 | 6 | 2 |
| Bifidobacterium dentium Bd1 | 3 | 2 |
| Bifidobacterium gallicum DSM 20093 | 2 | 1 |
| Bifidobacterium longum NCC2705 | 6 | 2 |
| Bifidobacterium longum subsp. infantis ATCC 15697 | 6 | 2 |
| Gardnerella vaginalis 409-05 | 6 | 2 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| nrdD |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -113 score = 4.66462 sequence = ACACTACATTTAGTGC Gene: BAD_1216: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Bifidobacterium angulatum DSM 20098 Site: position = -129 score = 4.0327 sequence = ACACTAGCCCTAGTGT Site: position = -98 score = 4.49552 sequence = GAACTATATGTAGGGG Gene: BIFANG_00874: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -119 score = 4.86322 sequence = GTACTACATCTAGTGT Site: position = -151 score = 4.16114 sequence = GCACAACATGTTGGTC Gene: BLA_0521: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -124 score = 5.23669 sequence = CCACTATATCTAGGGG Gene: BbifN4_010100001805: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Bifidobacterium breve DSM 20213 Site: position = -174 score = 3.90361 sequence = CCACTATAAATAGTTC Site: position = -142 score = 5.08699 sequence = ACACTAGATATAGGGG Gene: BIFBRE_00457: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Bifidobacterium dentium Bd1 Site: position = -112 score = 4.83701 sequence = CTACTAGATATAGTGC Gene: BDP_1694: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Bifidobacterium gallicum DSM 20093 Site: position = -144 score = 4.112 sequence = CCACCATATCTAGTCA Site: position = -113 score = 4.46434 sequence = GAACTAGATATAGGGG Gene: BIFGAL_00567: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Bifidobacterium longum NCC2705 Site: position = -174 score = 3.59348 sequence = ACCCTATAAATAGTTC Site: position = -142 score = 5.0258 sequence = GCACTAGATATAGGGG Gene: BL1752: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -174 score = 3.59348 sequence = ACCCTATAAATAGTTC Site: position = -142 score = 5.18622 sequence = GCACTAGATATAGTGG Gene: Blon_0612: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Gardnerella vaginalis 409-05 Site: position = -116 score = 4.6652 sequence = GCCCTAGATATTGTGC Site: position = -148 score = 4.13059 sequence = TCACTATATATAGGTG Gene: HMPREF0424_1125: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| nrdG |
Gene: BAD_1215: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: BIFANG_00875: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: BLA_0520: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: BbifN4_010100001810: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: BIFBRE_00458: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: BDP_1693: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: BIFGAL_00566: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: BL1753: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Blon_0613: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: HMPREF0424_1124: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
| CRON 2. | |||||||||||
| nrdH |
|
|
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -88 score = 5.42333 sequence = ACACTAGATGTAGTGG Site: position = -56 score = 3.73899 sequence = ACACAAGGTATTGTTT Gene: BLA_0313: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -121 score = 4.87869 sequence = ACACTACATATAGTGA Site: position = -89 score = 4.23922 sequence = ACACGACTTGTAGGGG Gene: BbifN4_010100007467: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Bifidobacterium breve DSM 20213 Site: position = -75 score = 4.52553 sequence = CCACTATATCTAGGTT Site: position = -43 score = 5.2174 sequence = CCACTACATATAGTGC Gene: BIFBRE_00660: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Bifidobacterium dentium Bd1 Site: position = -94 score = 4.7426 sequence = CCACTACAGGTAGTGT Site: position = -126 score = 4.71165 sequence = CCACTATATGCAGTGG Gene: BDP_0182: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
|
*
Bifidobacterium longum NCC2705 Site: position = -75 score = 4.2154 sequence = ACCCTATATCTAGGTT Site: position = -43 score = 5.2174 sequence = CCACTACATATAGTGC Gene: BL0668: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -123 score = 4.12563 sequence = TCACTATATCTAGGTT Site: position = -91 score = 5.2174 sequence = CCACTACATATAGTGC Gene: Blon_2480: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Gardnerella vaginalis 409-05 Site: position = -129 score = 4.14131 sequence = TAACTATATATAGTGT Site: position = -97 score = 4.46507 sequence = CCACTATAAATAGTGC Gene: HMPREF0424_0179: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
| nrdI |
|
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Gene: BLA_0312: Ribonucleotide reduction protein NrdI |
Gene: BbifN4_010100007462: Ribonucleotide reduction protein NrdI |
Gene: BIFBRE_00659: Ribonucleotide reduction protein NrdI |
|
|
Gene: BL0669: Ribonucleotide reduction protein NrdI |
Gene: Blon_2479: Ribonucleotide reduction protein NrdI |
Gene: HMPREF0424_0178: Ribonucleotide reduction protein NrdI |
Ribonucleotide reduction protein NrdI |
| nrdE |
|
|
Gene: BLA_0311: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: BbifN4_010100007457: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: BIFBRE_00658: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
|
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Gene: BL0670: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: Blon_2478: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: HMPREF0424_0177: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdF |
|
|
Gene: BLA_0310: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: BbifN4_010100007452: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: BIFBRE_00657: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: BL0671: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Blon_2477: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: HMPREF0424_0176: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |