Regulog SgaR2 - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Ascorbate utilization
Effector:	Ascorbate-6-phosphate
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By effector - Ascorbate-6-phosphate
By pathway - Ascorbate utilization

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium adolescentis ATCC 15703
Bifidobacterium angulatum DSM 20098
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171	4	2
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705
Bifidobacterium longum subsp. infantis ATCC 15697
Gardnerella vaginalis 409-05	7	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
ptsI	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0166: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00108: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100006908: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01978: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Bifidobacterium dentium Bd1 Gene: BDP_0254: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00157: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0178: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	* Gardnerella vaginalis 409-05 Site: position = -140 score = 6.05283 sequence = TACAGAAAACGTTTTCACTT Gene: HMPREF0424_1268: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
sgaA2	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	* Bifidobacterium bifidum NCIMB 41171 Site: position = -137 score = 5.57763 sequence = TTGAGAAATCGGTTTCCGGG Gene: BbifN4_010100009110: Ascorbate-specific PTS system, EIIA component (EC 2.7.1.69)	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697	Gardnerella vaginalis 409-05 Gene: HMPREF0424_1267: Ascorbate-specific PTS system, EIIA component (EC 2.7.1.69)	Ascorbate-specific PTS system, EIIA component (EC 2.7.1.69)
sgaB2	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100009115: Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697	Gardnerella vaginalis 409-05 Gene: HMPREF0424_1266: Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)	Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)
HMPREF0424_1265	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697	Gardnerella vaginalis 409-05 Gene: HMPREF0424_1265: putative lipoprotein	putative lipoprotein
sgaT2	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100009120: Ascorbate-specific PTS, EIIC component	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697	Gardnerella vaginalis 409-05 Gene: HMPREF0424_1264: Ascorbate-specific PTS, EIIC component	Ascorbate-specific PTS, EIIC component

CRON 2.
hpr	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00109: Phosphotransferase system, phosphocarrier protein HPr	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100006903: Phosphotransferase system, phosphocarrier protein HPr	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01976: Phosphotransferase system, phosphocarrier protein HPr	Bifidobacterium dentium Bd1 Gene: BDP_0253: Phosphotransferase system, phosphocarrier protein HPr	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00155: Phosphotransferase system, phosphocarrier protein HPr	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0177: Phosphotransferase system, phosphocarrier protein HPr	* Gardnerella vaginalis 409-05 Site: position = -153 score = 6.05283 sequence = AAGTGAAAACGTTTTCTGTA Gene: HMPREF0424_1269: Phosphotransferase system, phosphocarrier protein HPr	Phosphotransferase system, phosphocarrier protein HPr
sgaR2	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	* Bifidobacterium bifidum NCIMB 41171 Site: position = -212 score = 5.57763 sequence = CCCGGAAACCGATTTCTCAA Gene: BbifN4_010100009105: Predicted transcriptional regulator of ascorbate utilization, LacI family	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697	Gardnerella vaginalis 409-05 Gene: HMPREF0424_1270: Predicted transcriptional regulator of ascorbate utilization, LacI family	Predicted transcriptional regulator of ascorbate utilization, LacI family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SgaR2 - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --