Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TalR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: L-talarate utilization
Effector: L-talarate
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 7 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Methylibium petroleiphilum PM1
Leptothrix cholodnii SP-6
Verminephrobacter eiseniae EF01-2
Delftia acidovorans SPH-1 3 2
Acidovorax sp. JS42
Acidovorax avenae subsp. citrulli AAC00-1
Comamonas testosteroni KF-1
Variovorax paradoxus S110
Rhodoferax ferrireducens DSM 15236
Polaromonas sp. JS666 3 2
Polaromonas naphthalenivorans CJ2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
talR
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
 
Verminephrobacter eiseniae EF01-2
*
Delftia acidovorans SPH-1

Site:
position = -132
score = 6.99211
sequence = AAATGATATCGTTGTCATTT

Site:
position = -212
score = 6.82001
sequence = GAATGACATCGTTGTCATTT

Gene: Daci_4288: Predicted L-talarate-specific transcriptional regulator, LacI family
 
Acidovorax sp. JS42
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Comamonas testosteroni KF-1
 
Variovorax paradoxus S110
 
Rhodoferax ferrireducens DSM 15236
*
Polaromonas sp. JS666

Site:
position = -328
score = 6.78949
sequence = TAATGATAACGTTGTCATTT

Gene: Bpro_0436: Predicted L-talarate-specific transcriptional regulator, LacI family
 
Polaromonas naphthalenivorans CJ2
Predicted L-talarate-specific transcriptional regulator, LacI family
 
CRON 2.
tctC
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
 
Verminephrobacter eiseniae EF01-2
*
Delftia acidovorans SPH-1

Site:
position = -37
score = 6.82001
sequence = AAATGACAACGATGTCATTC

Site:
position = -117
score = 6.99211
sequence = AAATGACAACGATATCATTT

Gene: Daci_4289: Tripartite tricarboxylate transporter family receptor, putative transporter for L-talarate
 
Acidovorax sp. JS42
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Comamonas testosteroni KF-1
 
Variovorax paradoxus S110
 
Rhodoferax ferrireducens DSM 15236
 
Polaromonas sp. JS666

Gene: Bpro_0434: Tripartite tricarboxylate transporter family receptor, putative transporter for L-talarate
 
Polaromonas naphthalenivorans CJ2
Tripartite tricarboxylate transporter family receptor, putative transporter for L-talarate
talD
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
 
Verminephrobacter eiseniae EF01-2
 
Delftia acidovorans SPH-1

Gene: Daci_4290: L-talarate dehydratase (EC 4.2.1.-)
 
Acidovorax sp. JS42
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Comamonas testosteroni KF-1
 
Variovorax paradoxus S110
 
Rhodoferax ferrireducens DSM 15236
*
Polaromonas sp. JS666

Site:
position = -159
score = 7.04689
sequence = AAATGATAACGTTATCATTT

Site:
position = -281
score = 6.78949
sequence = AAATGACAACGTTATCATTA

Gene: Bpro_0435: L-talarate dehydratase (EC 4.2.1.-)
 
Polaromonas naphthalenivorans CJ2
L-talarate dehydratase (EC 4.2.1.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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