Regulog IcaR - Staphylococcaceae

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Intercellular adhesion
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Staphylococcaceae
By TF family - TetR
By pathway - Intercellular adhesion

Statistics of regulated genes
Genome	Genes	Operons
Staphylococcus aureus subsp. aureus N315	5	2
Staphylococcus capitis SK14	5	2
Staphylococcus epidermidis ATCC 12228
Staphylococcus carnosus subsp. carnosus TM300
Staphylococcus haemolyticus JCSC1435
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
Macrococcus caseolyticus JCSC5402

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
icaR	* Staphylococcus aureus subsp. aureus N315 Site: position = -156 score = 7.23972 sequence = ACCTACCTTTCGTTAGTTAGGT Gene: SA2458: icaADBC operon transcriptional regulator	* Staphylococcus capitis SK14 Site: position = -159 score = 7.23972 sequence = ACCTACCTTTCGTTAGTTAGGT Gene: STACA0001_0089: icaADBC operon transcriptional regulator	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0084: icaADBC operon transcriptional regulator	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0115: icaADBC operon transcriptional regulator	Macrococcus caseolyticus JCSC5402	icaADBC operon transcriptional regulator

CRON 2.
icaA	* Staphylococcus aureus subsp. aureus N315 Site: position = -29 score = 7.23972 sequence = ACCTAACTAACGAAAGGTAGGT Gene: SA2459: polysaccharide intercellular adhesin biosynthesis N-glycosyltransferase (EC 2.4.-.-)	* Staphylococcus capitis SK14 Site: position = -29 score = 7.23972 sequence = ACCTAACTAACGAAAGGTAGGT Gene: STACA0001_0088: polysaccharide intercellular adhesin biosynthesis N-glycosyltransferase (EC 2.4.-.-)	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	polysaccharide intercellular adhesin biosynthesis N-glycosyltransferase (EC 2.4.-.-)
icaD	Staphylococcus aureus subsp. aureus N315 Gene: SA2460: polysaccharide intercellular adhesin biosynthesis protein	Staphylococcus capitis SK14 Gene: STACA0001_0087: polysaccharide intercellular adhesin biosynthesis protein	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	polysaccharide intercellular adhesin biosynthesis protein
icaB	Staphylococcus aureus subsp. aureus N315 Gene: SA2461: polysaccharide intercellular adhesin biosynthesis deacetylase (EC 3.-.-.-)	Staphylococcus capitis SK14 Gene: STACA0001_0086: polysaccharide intercellular adhesin biosynthesis deacetylase (EC 3.-.-.-)	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	polysaccharide intercellular adhesin biosynthesis deacetylase (EC 3.-.-.-)
icaC	Staphylococcus aureus subsp. aureus N315 Gene: SA2462: polysaccharide intercellular adhesin biosynthesis protein	Staphylococcus capitis SK14 Gene: STACA0001_0085: polysaccharide intercellular adhesin biosynthesis protein	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	polysaccharide intercellular adhesin biosynthesis protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog IcaR - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --