Regulog CldR - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Cellodextrin utilization
Effector:	Cellobiose
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By effector - Cellobiose
By pathway - Cellodextrin utilization

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium adolescentis ATCC 15703
Bifidobacterium angulatum DSM 20098
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1	4	2
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
cldR	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -181 score = 4.43473 sequence = ACGCTGGAATCGTTTCCAAAAG Gene: BDP_0136: Cellodextrin utilization transcriptional regulator, LacI family	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Cellodextrin utilization transcriptional regulator, LacI family

CRON 2.
cldE	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -173 score = 5.59545 sequence = TTGATGGAAACGGTTCCATCAA Gene: BDP_0137: ABC-type cellodextrin transport system, substrate-binding component	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type cellodextrin transport system, substrate-binding component
cldF	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0138: ABC-type cellodextrin transport system, permease component	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type cellodextrin transport system, permease component
cldG	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0139: ABC-type cellodextrin transport system, permease component	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type cellodextrin transport system, permease component

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog CldR - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --