Regulog RbsR2 - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Ribonucleoside utilization
Effector:	Ribose
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By effector - Ribose
By pathway - Ribonucleoside utilization

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697	3	1
Bifidobacterium adolescentis ATCC 15703
Bifidobacterium angulatum DSM 20098
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213	4	1
Bifidobacterium dentium Bd1
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705	4	1
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
BL1769	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	* Bifidobacterium breve DSM 20213 Site: position = -67 score = 6.12487 sequence = TTGGTAAAAGGTTATATCAT Site: position = -35 score = 6.49088 sequence = TTGATTAAACGTTTTATCAA Gene: BIFBRE_00473: Acyl-CoA N-acyltransferase	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -109 score = 6.12487 sequence = TTGGTAAAAGGTTATATCAT Site: position = -77 score = 6.49088 sequence = TTGATTAAACGTTTTATCAA Gene: BL1769: Acyl-CoA N-acyltransferase	Gardnerella vaginalis 409-05	Acyl-CoA N-acyltransferase
rihC	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -71 score = 6.22729 sequence = ATGATGAAACGTTAAATCAT Site: position = -102 score = 5.91868 sequence = GTGATTTAACGTCTTATCAT Gene: Blon_0638: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00474: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL1770: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)	Gardnerella vaginalis 409-05	Non-specific ribonucleoside hydrolase (EC 3.2.-.-)
rihP	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00475: Predicted ribonucleoside transporter, DcuC family	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL1771: Predicted ribonucleoside transporter, DcuC family	Gardnerella vaginalis 409-05	Predicted ribonucleoside transporter, DcuC family
rbsK	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0640: Ribokinase (EC 2.7.1.15)	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00476: Ribokinase (EC 2.7.1.15)	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL1772: Ribokinase (EC 2.7.1.15)	Gardnerella vaginalis 409-05	Ribokinase (EC 2.7.1.15)
rihT	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0639: Predicted ribonucleoside transporter, MFS family	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Predicted ribonucleoside transporter, MFS family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RbsR2 - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --