Regulog MsmR1 - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Alpha-galactosides utilization
Effector:	Alpha-galactosides
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By effector - Alpha-galactosides
By pathway - Alpha-galactosides utilization

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697	1	1
Bifidobacterium adolescentis ATCC 15703
Bifidobacterium angulatum DSM 20098
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213	1	1
Bifidobacterium dentium Bd1	5	1
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
agaL1	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -55 score = 5.43079 sequence = GCTTGATAACGTTATCGGGT Site: position = -155 score = 5.18256 sequence = ACGTGAAAACGTTATCGAAG Gene: BDP_0487: Alpha-galactosidase 1 (EC:3.2.1.22)	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Alpha-galactosidase 1 (EC:3.2.1.22)
msmE1	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0488: Multiple sugar ABC transporter, substrate-binding protein	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Multiple sugar ABC transporter, substrate-binding protein
msmF1	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0489: Multiple sugar ABC transporter, membrane-spanning permease 1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Multiple sugar ABC transporter, membrane-spanning permease 1
msmG1	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0491: Multiple sugar ABC transporter, membrane-spanning permease 2	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Multiple sugar ABC transporter, membrane-spanning permease 2
msmR1	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -210 score = 6.21543 sequence = TTTTGAAACCGGTTTCAGAA Gene: Blon_1483: Transcriptional regulator of alpha-galactoside utilization, LacI family	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	* Bifidobacterium breve DSM 20213 Site: position = -181 score = 6.17382 sequence = TTCTGAAACCGGTTTCAGAA Gene: BIFBRE_01266: Transcriptional regulator of alpha-galactoside utilization, LacI family	Bifidobacterium dentium Bd1 Gene: BDP_0492: Transcriptional regulator of alpha-galactoside utilization, LacI family	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL0838: Transcriptional regulator of alpha-galactoside utilization, LacI family	Gardnerella vaginalis 409-05	Transcriptional regulator of alpha-galactoside utilization, LacI family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MsmR1 - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --