Regulog XosR - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Xylooligosacharides utilization |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - LacI
- By pathway - Xylooligosacharides utilization
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium longum subsp. infantis ATCC 15697 | ||
| Bifidobacterium adolescentis ATCC 15703 | 6 | 2 |
| Bifidobacterium angulatum DSM 20098 | 6 | 2 |
| Bifidobacterium animalis subsp. lactis AD011 | ||
| Bifidobacterium bifidum NCIMB 41171 | ||
| Bifidobacterium breve DSM 20213 | ||
| Bifidobacterium dentium Bd1 | 5 | 2 |
| Bifidobacterium gallicum DSM 20093 | 2 | 2 |
| Bifidobacterium longum NCC2705 | ||
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| xosA |
|
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -275 score = 5.67488 sequence = TTTTCGAAACTTTCGATAT Site: position = -141 score = 5.39297 sequence = AAATGGAAATTTTCGAAGG Site: position = -298 score = 5.65185 sequence = CGAACGAAAGTTTCGGTTT Gene: BAD_0425: Xylooligosacharides ABC transporter, substrate binding protein |
*
Bifidobacterium angulatum DSM 20098 Site: position = -318 score = 5.65185 sequence = CGAACGAAAGTTTCGGTTT Site: position = -161 score = 5.39297 sequence = AAATGGAAATTTTCGAAGG Site: position = -295 score = 5.67488 sequence = TTTTCGAAACTTTCGATAT Gene: BIFANG_00032: Xylooligosacharides ABC transporter, substrate binding protein |
|
|
|
*
Bifidobacterium dentium Bd1 Site: position = -65 score = 5.3333 sequence = CTTTCGAAGCTTTCGTTCT Site: position = -306 score = 5.73456 sequence = ATTTCGAAACTTTCGGATT Site: position = -329 score = 5.73228 sequence = AGAGCGAAAGTTTCGAATT Gene: BDP_0565: Xylooligosacharides ABC transporter, substrate binding protein |
*
Bifidobacterium gallicum DSM 20093 Site: position = -327 score = 5.85148 sequence = ATATCGAAACTTTCGTAGT Gene: BIFGAL_00973: Xylooligosacharides ABC transporter, substrate binding protein |
|
|
Xylooligosacharides ABC transporter, substrate binding protein |
| xosB |
|
Gene: BAD_0426: Xylooligosacharides ABC transporter, permease protein 2 |
Gene: BIFANG_00031: Xylooligosacharides ABC transporter, permease protein 2 |
Gene: BLA_1046: Xylooligosacharides ABC transporter, permease protein 2 |
|
|
Gene: BDP_0566: Xylooligosacharides ABC transporter, permease protein 2 |
Gene: BIFGAL_00978: Xylooligosacharides ABC transporter, permease protein 2 |
|
|
Xylooligosacharides ABC transporter, permease protein 2 |
| xosC |
|
Gene: BAD_0427: Xylooligosacharides ABC transporter, permease protein 2 |
Gene: BIFANG_00030: Xylooligosacharides ABC transporter, permease protein 2 |
Gene: BLA_1047: Xylooligosacharides ABC transporter, permease protein 2 |
|
|
Gene: BDP_0567: Xylooligosacharides ABC transporter, permease protein 2 |
Gene: BIFGAL_00979: Xylooligosacharides ABC transporter, permease protein 2 |
|
|
Xylooligosacharides ABC transporter, permease protein 2 |
| xynB |
|
Gene: BAD_0428: Beta-xylosidase (EC 3.2.1.37) |
Gene: BIFANG_00029: Beta-xylosidase (EC 3.2.1.37) |
Gene: BLA_1048: Beta-xylosidase (EC 3.2.1.37) |
|
|
Gene: BDP_0568: Beta-xylosidase (EC 3.2.1.37) |
Gene: BIFGAL_00980: Beta-xylosidase (EC 3.2.1.37) |
|
|
Beta-xylosidase (EC 3.2.1.37) |
| PF03629 |
|
Gene: BAD_0429: protein of unknown function DUF303, acetylesterase putative |
Gene: BIFANG_00028: protein of unknown function DUF303, acetylesterase putative |
Gene: BLA_1049: protein of unknown function DUF303, acetylesterase putative |
|
|
|
Gene: BIFGAL_00983: protein of unknown function DUF303, acetylesterase putative |
|
|
protein of unknown function DUF303, acetylesterase putative |
| CRON 2. | |||||||||||
| xosR |
|
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -57 score = 5.65185 sequence = AAACCGAAACTTTCGTTCG Site: position = -80 score = 5.67488 sequence = ATATCGAAAGTTTCGAAAA Site: position = -214 score = 5.39297 sequence = CCTTCGAAAATTTCCATTT Gene: BAD_0424: Transcriptional regulator of xylooligosacharides utilization, LacI family |
*
Bifidobacterium angulatum DSM 20098 Site: position = -57 score = 5.65185 sequence = AAACCGAAACTTTCGTTCG Site: position = -214 score = 5.39297 sequence = CCTTCGAAAATTTCCATTT Site: position = -80 score = 5.67488 sequence = ATATCGAAAGTTTCGAAAA Gene: BIFANG_00034: Transcriptional regulator of xylooligosacharides utilization, LacI family |
|
|
|
*
Bifidobacterium dentium Bd1 Site: position = -79 score = 5.73456 sequence = AATCCGAAAGTTTCGAAAT Site: position = -56 score = 5.73228 sequence = AATTCGAAACTTTCGCTCT Gene: BDP_0563: Transcriptional regulator of xylooligosacharides utilization, LacI family |
*
Bifidobacterium gallicum DSM 20093 Site: position = -17 score = 5.85148 sequence = ACTACGAAAGTTTCGATAT Gene: BIFGAL_00972: Transcriptional regulator of xylooligosacharides utilization, LacI family |
|
|
Transcriptional regulator of xylooligosacharides utilization, LacI family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |