Regulog XosR - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Xylooligosacharides utilization
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By pathway - Xylooligosacharides utilization

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium adolescentis ATCC 15703	6	2
Bifidobacterium angulatum DSM 20098	6	2
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1	5	2
Bifidobacterium gallicum DSM 20093	2	2
Bifidobacterium longum NCC2705
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
xosA	Bifidobacterium longum subsp. infantis ATCC 15697	* Bifidobacterium adolescentis ATCC 15703 Site: position = -275 score = 5.67488 sequence = TTTTCGAAACTTTCGATAT Site: position = -141 score = 5.39297 sequence = AAATGGAAATTTTCGAAGG Site: position = -298 score = 5.65185 sequence = CGAACGAAAGTTTCGGTTT Gene: BAD_0425: Xylooligosacharides ABC transporter, substrate binding protein	* Bifidobacterium angulatum DSM 20098 Site: position = -318 score = 5.65185 sequence = CGAACGAAAGTTTCGGTTT Site: position = -161 score = 5.39297 sequence = AAATGGAAATTTTCGAAGG Site: position = -295 score = 5.67488 sequence = TTTTCGAAACTTTCGATAT Gene: BIFANG_00032: Xylooligosacharides ABC transporter, substrate binding protein	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -65 score = 5.3333 sequence = CTTTCGAAGCTTTCGTTCT Site: position = -306 score = 5.73456 sequence = ATTTCGAAACTTTCGGATT Site: position = -329 score = 5.73228 sequence = AGAGCGAAAGTTTCGAATT Gene: BDP_0565: Xylooligosacharides ABC transporter, substrate binding protein	* Bifidobacterium gallicum DSM 20093 Site: position = -327 score = 5.85148 sequence = ATATCGAAACTTTCGTAGT Gene: BIFGAL_00973: Xylooligosacharides ABC transporter, substrate binding protein	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Xylooligosacharides ABC transporter, substrate binding protein
xosB	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0426: Xylooligosacharides ABC transporter, permease protein 2	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00031: Xylooligosacharides ABC transporter, permease protein 2	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_1046: Xylooligosacharides ABC transporter, permease protein 2	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0566: Xylooligosacharides ABC transporter, permease protein 2	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00978: Xylooligosacharides ABC transporter, permease protein 2	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Xylooligosacharides ABC transporter, permease protein 2
xosC	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0427: Xylooligosacharides ABC transporter, permease protein 2	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00030: Xylooligosacharides ABC transporter, permease protein 2	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_1047: Xylooligosacharides ABC transporter, permease protein 2	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0567: Xylooligosacharides ABC transporter, permease protein 2	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00979: Xylooligosacharides ABC transporter, permease protein 2	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Xylooligosacharides ABC transporter, permease protein 2
xynB	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0428: Beta-xylosidase (EC 3.2.1.37)	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00029: Beta-xylosidase (EC 3.2.1.37)	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_1048: Beta-xylosidase (EC 3.2.1.37)	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0568: Beta-xylosidase (EC 3.2.1.37)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00980: Beta-xylosidase (EC 3.2.1.37)	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Beta-xylosidase (EC 3.2.1.37)
PF03629	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0429: protein of unknown function DUF303, acetylesterase putative	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00028: protein of unknown function DUF303, acetylesterase putative	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_1049: protein of unknown function DUF303, acetylesterase putative	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00983: protein of unknown function DUF303, acetylesterase putative	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	protein of unknown function DUF303, acetylesterase putative

CRON 2.
xosR	Bifidobacterium longum subsp. infantis ATCC 15697	* Bifidobacterium adolescentis ATCC 15703 Site: position = -57 score = 5.65185 sequence = AAACCGAAACTTTCGTTCG Site: position = -80 score = 5.67488 sequence = ATATCGAAAGTTTCGAAAA Site: position = -214 score = 5.39297 sequence = CCTTCGAAAATTTCCATTT Gene: BAD_0424: Transcriptional regulator of xylooligosacharides utilization, LacI family	* Bifidobacterium angulatum DSM 20098 Site: position = -57 score = 5.65185 sequence = AAACCGAAACTTTCGTTCG Site: position = -214 score = 5.39297 sequence = CCTTCGAAAATTTCCATTT Site: position = -80 score = 5.67488 sequence = ATATCGAAAGTTTCGAAAA Gene: BIFANG_00034: Transcriptional regulator of xylooligosacharides utilization, LacI family	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -79 score = 5.73456 sequence = AATCCGAAAGTTTCGAAAT Site: position = -56 score = 5.73228 sequence = AATTCGAAACTTTCGCTCT Gene: BDP_0563: Transcriptional regulator of xylooligosacharides utilization, LacI family	* Bifidobacterium gallicum DSM 20093 Site: position = -17 score = 5.85148 sequence = ACTACGAAAGTTTCGATAT Gene: BIFGAL_00972: Transcriptional regulator of xylooligosacharides utilization, LacI family	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Transcriptional regulator of xylooligosacharides utilization, LacI family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog XosR - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --