Regulog RspR - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	L-gulonate utilization
Effector:	L-gulonate; D-mannonate
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 1 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By TF family - GntR/Others
By effector - L-gulonate
By effector - D-mannonate
By pathway - L-gulonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Alcanivorax borkumensis SK2
Chromohalobacter salexigens DSM 3043	8	1
Hahella chejuensis KCTC 2396
Marinomonas sp. MWYL1
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Reinekea sp. MED297
Cellvibrio japonicus Ueda107
Marinobacter aqueolei
Marinobacter sp. ELB17
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
rspR	Alcanivorax borkumensis SK2	* Chromohalobacter salexigens DSM 3043 Site: position = -46 score = 6.20975 sequence = CCAACTACCATACTAGTCAG Gene: Csal_2973: Transcriptional regulator for L-gulonate utilization, GntR family	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	Marinobacter sp. ELB17	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Transcriptional regulator for L-gulonate utilization, GntR family
rspA	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_2974: D-mannonate dehydratase (EC 4.2.1.8), COG4948 family	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1 Gene: Mmwyl1_0037: D-mannonate dehydratase (EC 4.2.1.8), COG4948 family	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	Marinobacter sp. ELB17	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	D-mannonate dehydratase (EC 4.2.1.8), COG4948 family
rspB	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_2975: L-gulonate dehydrogenase, COG1063 family	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1 Gene: Mmwyl1_0038: L-gulonate dehydrogenase, COG1063 family	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	Marinobacter sp. ELB17	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	L-gulonate dehydrogenase, COG1063 family
rspP	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_2976: L-gulonate/D-mannonate-specific TRAP-type transport system, periplasmic component	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1 Gene: Mmwyl1_0043: L-gulonate/D-mannonate-specific TRAP-type transport system, periplasmic component	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	Marinobacter sp. ELB17	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	L-gulonate/D-mannonate-specific TRAP-type transport system, periplasmic component
rspQ	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_2977: L-gulonate/D-mannonate-specific TRAP-type transport system, small permease component	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1 Gene: Mmwyl1_0044: L-gulonate/D-mannonate-specific TRAP-type transport system, small permease component	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	Marinobacter sp. ELB17	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	L-gulonate/D-mannonate-specific TRAP-type transport system, small permease component
rspM	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_2978: L-gulonate/D-mannonate-specific TRAP-type transport system, large permease component	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1 Gene: Mmwyl1_0045: L-gulonate/D-mannonate-specific TRAP-type transport system, large permease component	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	Marinobacter sp. ELB17	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	L-gulonate/D-mannonate-specific TRAP-type transport system, large permease component
rspD	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_2979: D-mannonate oxidoreductase (EC 1.1.1.57)	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	Marinobacter sp. ELB17	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	D-mannonate oxidoreductase (EC 1.1.1.57)
uxuA	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_2980: Mannonate dehydratase (EC 4.2.1.8)	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	Marinobacter sp. ELB17	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Mannonate dehydratase (EC 4.2.1.8)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RspR - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --