Regulog FMN - Clostridia-2
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridia-2
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium bartlettii DSM 16795 | 6 | 3 |
| Clostridium difficile 630 | 6 | 3 |
| Clostridium hiranonis DSM 13275 | 5 | 2 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| ribU |
*
Clostridium bartlettii DSM 16795 Site: position = -231 score = 119.42 sequence = AAAAAATCTTCGGGG... Gene: CLOBAR_00719: Substrate-specific component RibU of riboflavin ECF transporter |
*
Clostridium difficile 630 Site: position = -268 score = 123.2 sequence = AAGATCTTCGGGGCA... Gene: CD0147: Substrate-specific component RibU of riboflavin ECF transporter |
*
Clostridium hiranonis DSM 13275 Site: position = -311 score = 112.62 sequence = GATGTCTTCAGGGCA... Gene: CLOHIR_01113: Substrate-specific component RibU of riboflavin ECF transporter |
Substrate-specific component RibU of riboflavin ECF transporter |
| CRON 2. | ||||
| ribZ |
|
*
Clostridium difficile 630 Site: position = -289 score = 97.53 sequence = TTTTTCTTCATAAAC... Gene: CD3299: Riboflavin transporter, COG2814 family |
|
Riboflavin transporter, COG2814 family |
| CRON 3. | ||||
| ribD |
*
Clostridium bartlettii DSM 16795 Site: position = -253 score = 120.74 sequence = GATTATTCTTCGGGG... Gene: CLOBAR_00909: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Clostridium difficile 630 Site: position = -254 score = 118.75 sequence = ACTTAATCTTCGGGG... Gene: CD1700: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Clostridium hiranonis DSM 13275 Site: position = -211 score = 123.02 sequence = ACTATCTTCAGGGCA... Gene: CLOHIR_00483: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
| ribE |
Gene: CLOBAR_00908: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: CD1699: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: CLOHIR_00484: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Riboflavin synthase alpha chain (EC 2.5.1.9) |
| ribBA |
Gene: CLOBAR_00907: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: CD1698: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: CLOHIR_00485: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
| ribH |
Gene: CLOBAR_00906: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: CD1697: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: CLOHIR_00486: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
| CRON 4. | ||||
| xylB |
*
Clostridium bartlettii DSM 16795 Site: position = -211 score = 121.32 sequence = TATATGTCTTCGGGG... Gene: CLOBAR_00632: Sugar (pentulose and hexulose) kinases |
|
|
Sugar (pentulose and hexulose) kinases |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |