Regulog PdxR3 - Frankineae/Propionibacterineae/Pseudonocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine biosynthesis |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By pathway - Pyridoxine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Actinosynnema mirum DSM 43827 | ||
| Saccharomonospora viridis DSM 43017 | ||
| Saccharopolyspora erythraea NRRL 2338 | 1 | 1 |
| Acidothermus cellulolyticus 11B | ||
| Frankia sp. CcI3 | ||
| Frankia sp. EAN1pec | ||
| Nakamurella multipartita DSM 44233 | 4 | 1 |
| Nocardioides sp. JS614 | 1 | 1 |
| Propionibacterium acnes KPA171202 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| COG2364 |
Gene: Amir_6791: putative integral membrane protein |
Gene: Svir_02390: putative integral membrane protein |
*
Saccharopolyspora erythraea NRRL 2338 Site: position = -55 score = 11.4999 sequence = GAGTCCAATTA-(4)-ATATTGGACTT-(7)-AATACCAATAT Gene: SACE_7002: putative integral membrane protein |
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|
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*
Nakamurella multipartita DSM 44233 Site: position = -61 score = 12.3813 sequence = CAGACCAGTTT-(4)-CAACTGGTACT-(7)-CAGACCACATT Gene: Namu_3401: putative integral membrane protein |
*
Nocardioides sp. JS614 Site: position = -60 score = 13.3445 sequence = CAGGCCACTCT-(4)-CGATTGGCTAT-(7)-AAGGCCAATCT Gene: Noca_3372: putative integral membrane protein |
|
putative integral membrane protein |
| Amir_5405 |
Gene: Amir_5405: putative integral membrane protein |
|
Gene: SACE_4270: putative integral membrane protein |
Gene: Acel_1895: putative integral membrane protein |
Gene: Francci3_3909: putative integral membrane protein |
2
Frankia sp. EAN1pec Gene: Franean1_2002: putative integral membrane protein Gene: Franean1_0820: putative integral membrane protein |
Gene: Namu_3400: putative integral membrane protein |
|
|
putative integral membrane protein |
| pdxT |
Gene: Amir_2109: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
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Gene: SACE_2017: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: Acel_1347: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: Francci3_1367: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: Franean1_5148: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
2
Nakamurella multipartita DSM 44233 Gene: Namu_2036: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) Gene: Namu_3399: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: Noca_2382: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: PPA0966: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
| Amir_2110 |
Gene: Amir_2110: protein of unknown function DUF28 |
Gene: Svir_15040: protein of unknown function DUF28 |
Gene: SACE_2018: protein of unknown function DUF28 |
Gene: Acel_1346: protein of unknown function DUF28 |
Gene: Francci3_1368: protein of unknown function DUF28 |
Gene: Franean1_5147: protein of unknown function DUF28 |
Gene: Namu_3398: protein of unknown function DUF28 |
Gene: Noca_2383: protein of unknown function DUF28 |
Gene: PPA1157: protein of unknown function DUF28 |
protein of unknown function DUF28 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |