Regulog PdxR3 - Frankineae/Propionibacterineae/Pseudonocardiaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine biosynthesis
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
By trascription factor - PdxR
By TF family - GntR/MocR
By pathway - Pyridoxine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Actinosynnema mirum DSM 43827
Saccharomonospora viridis DSM 43017
Saccharopolyspora erythraea NRRL 2338	1	1
Acidothermus cellulolyticus 11B
Frankia sp. CcI3
Frankia sp. EAN1pec
Nakamurella multipartita DSM 44233	4	1
Nocardioides sp. JS614	1	1
Propionibacterium acnes KPA171202

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
COG2364	Actinosynnema mirum DSM 43827 Gene: Amir_6791: putative integral membrane protein	Saccharomonospora viridis DSM 43017 Gene: Svir_02390: putative integral membrane protein	* Saccharopolyspora erythraea NRRL 2338 Site: position = -55 score = 11.4999 sequence = GAGTCCAATTA-(4)-ATATTGGACTT-(7)-AATACCAATAT Gene: SACE_7002: putative integral membrane protein	Acidothermus cellulolyticus 11B	Frankia sp. CcI3	Frankia sp. EAN1pec	* Nakamurella multipartita DSM 44233 Site: position = -61 score = 12.3813 sequence = CAGACCAGTTT-(4)-CAACTGGTACT-(7)-CAGACCACATT Gene: Namu_3401: putative integral membrane protein	* Nocardioides sp. JS614 Site: position = -60 score = 13.3445 sequence = CAGGCCACTCT-(4)-CGATTGGCTAT-(7)-AAGGCCAATCT Gene: Noca_3372: putative integral membrane protein	Propionibacterium acnes KPA171202	putative integral membrane protein
Amir_5405	Actinosynnema mirum DSM 43827 Gene: Amir_5405: putative integral membrane protein	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_4270: putative integral membrane protein	Acidothermus cellulolyticus 11B Gene: Acel_1895: putative integral membrane protein	Frankia sp. CcI3 Gene: Francci3_3909: putative integral membrane protein	2 Frankia sp. EAN1pec Gene: Franean1_2002: putative integral membrane protein Gene: Franean1_0820: putative integral membrane protein	Nakamurella multipartita DSM 44233 Gene: Namu_3400: putative integral membrane protein	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	putative integral membrane protein
pdxT	Actinosynnema mirum DSM 43827 Gene: Amir_2109: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_2017: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Acidothermus cellulolyticus 11B Gene: Acel_1347: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Frankia sp. CcI3 Gene: Francci3_1367: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Frankia sp. EAN1pec Gene: Franean1_5148: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	2 Nakamurella multipartita DSM 44233 Gene: Namu_2036: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) Gene: Namu_3399: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Nocardioides sp. JS614 Gene: Noca_2382: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Propionibacterium acnes KPA171202 Gene: PPA0966: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Amir_2110	Actinosynnema mirum DSM 43827 Gene: Amir_2110: protein of unknown function DUF28	Saccharomonospora viridis DSM 43017 Gene: Svir_15040: protein of unknown function DUF28	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_2018: protein of unknown function DUF28	Acidothermus cellulolyticus 11B Gene: Acel_1346: protein of unknown function DUF28	Frankia sp. CcI3 Gene: Francci3_1368: protein of unknown function DUF28	Frankia sp. EAN1pec Gene: Franean1_5147: protein of unknown function DUF28	Nakamurella multipartita DSM 44233 Gene: Namu_3398: protein of unknown function DUF28	Nocardioides sp. JS614 Gene: Noca_2383: protein of unknown function DUF28	Propionibacterium acnes KPA171202 Gene: PPA1157: protein of unknown function DUF28	protein of unknown function DUF28

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxR3 - Frankineae/Propionibacterineae/Pseudonocardiaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --