Regulog YrdX - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia cepacia AMMD | ||
| Burkholderia glumae BGR1 | ||
| Burkholderia mallei ATCC 23344 | ||
| Burkholderia phymatum STM815 | 8 | 1 |
| Burkholderia pseudomallei K96243 | ||
| Burkholderia sp. 383 | ||
| Burkholderia vietnamiensis G4 | 5 | 1 |
| Burkholderia xenovorans LB400 | 6 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| PF02635 |
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Burkholderia phymatum STM815 Site: position = -127 score = 7.00343 sequence = ATTGATCG-(3)-GTTGATTG Site: position = -90 score = 5.37315 sequence = TTGGCATA-(3)-GTTGCGTT Gene: Bphy_4560: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein |
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Burkholderia vietnamiensis G4 Site: position = -123 score = 5.86705 sequence = AATGATTG-(3)-AATGATCG Site: position = -86 score = 5.37315 sequence = TTGGCATA-(3)-GTTGCGTT Gene: Bcep1808_6051: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein |
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Burkholderia xenovorans LB400 Site: position = -84 score = 6.18858 sequence = ATGGCACG-(3)-GTTGCATT Site: position = -121 score = 7.07738 sequence = ATTGATTG-(3)-ATTGATCG Site: position = -331 score = 5.99755 sequence = GTTGAAAA-(3)-GTTGATCG Gene: Bxe_A1407: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein |
probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein |
| COG388 |
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Gene: Bphy_4561: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7) |
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Gene: Bcep1808_6052: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7) |
Gene: Bxe_A1408: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7) |
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7) |
| COG2516 |
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Gene: Bphy_4562: Biotin synthase-related radical SAM domain protein |
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Gene: Bcep1808_6053: Biotin synthase-related radical SAM domain protein |
Gene: Bxe_A1409: Biotin synthase-related radical SAM domain protein |
Biotin synthase-related radical SAM domain protein |
| COG3153 |
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Gene: Bphy_4563: GCN5-related N-acetyltransferase |
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Gene: Bcep1808_6054: GCN5-related N-acetyltransferase |
Gene: Bxe_A1410: GCN5-related N-acetyltransferase |
GCN5-related N-acetyltransferase |
| COG2144 |
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Gene: Bphy_4564: AIR synthase related protein/Selenophosphate synthetase-related |
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Gene: Bcep1808_6055: AIR synthase related protein/Selenophosphate synthetase-related |
Gene: Bxe_A1411: AIR synthase related protein/Selenophosphate synthetase-related |
AIR synthase related protein/Selenophosphate synthetase-related |
| COG438 (RfaG) |
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Gene: Bphy_4565: Glycosyltransferase |
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Gene: Bcep1808_6056: Glycosyltransferase |
Gene: Bxe_A1412: Glycosyltransferase |
Glycosyltransferase |
| Bphy_4566 |
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Gene: Bphy_4566: NAD/NADP transhydrogenase alpha subunit |
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Gene: Bcep1808_6057: NAD/NADP transhydrogenase alpha subunit |
Gene: Bxe_A1413: NAD/NADP transhydrogenase alpha subunit |
NAD/NADP transhydrogenase alpha subunit |
| COG2072 (TrkA) |
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Gene: Bphy_4567: FAD dependent oxidoreductase |
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Gene: Bcep1808_6058: FAD dependent oxidoreductase |
Gene: Bxe_A1414: FAD dependent oxidoreductase |
FAD dependent oxidoreductase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |