Regulog YrdX - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 7 sites [see more]

Member of regulog collections

By taxonomy - Burkholderia
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia cepacia AMMD
Burkholderia glumae BGR1
Burkholderia mallei ATCC 23344
Burkholderia phymatum STM815	8	1
Burkholderia pseudomallei K96243
Burkholderia sp. 383
Burkholderia vietnamiensis G4	5	1
Burkholderia xenovorans LB400	6	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
PF02635	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	* Burkholderia phymatum STM815 Site: position = -127 score = 7.00343 sequence = ATTGATCG-(3)-GTTGATTG Site: position = -90 score = 5.37315 sequence = TTGGCATA-(3)-GTTGCGTT Gene: Bphy_4560: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein	Burkholderia pseudomallei K96243	Burkholderia sp. 383	* Burkholderia vietnamiensis G4 Site: position = -123 score = 5.86705 sequence = AATGATTG-(3)-AATGATCG Site: position = -86 score = 5.37315 sequence = TTGGCATA-(3)-GTTGCGTT Gene: Bcep1808_6051: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein	* Burkholderia xenovorans LB400 Site: position = -84 score = 6.18858 sequence = ATGGCACG-(3)-GTTGCATT Site: position = -121 score = 7.07738 sequence = ATTGATTG-(3)-ATTGATCG Site: position = -331 score = 5.99755 sequence = GTTGAAAA-(3)-GTTGATCG Gene: Bxe_A1407: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein	probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein
COG388	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_4561: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4 Gene: Bcep1808_6052: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)	Burkholderia xenovorans LB400 Gene: Bxe_A1408: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
COG2516	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_4562: Biotin synthase-related radical SAM domain protein	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4 Gene: Bcep1808_6053: Biotin synthase-related radical SAM domain protein	Burkholderia xenovorans LB400 Gene: Bxe_A1409: Biotin synthase-related radical SAM domain protein	Biotin synthase-related radical SAM domain protein
COG3153	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_4563: GCN5-related N-acetyltransferase	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4 Gene: Bcep1808_6054: GCN5-related N-acetyltransferase	Burkholderia xenovorans LB400 Gene: Bxe_A1410: GCN5-related N-acetyltransferase	GCN5-related N-acetyltransferase
COG2144	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_4564: AIR synthase related protein/Selenophosphate synthetase-related	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4 Gene: Bcep1808_6055: AIR synthase related protein/Selenophosphate synthetase-related	Burkholderia xenovorans LB400 Gene: Bxe_A1411: AIR synthase related protein/Selenophosphate synthetase-related	AIR synthase related protein/Selenophosphate synthetase-related
COG438 (RfaG)	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_4565: Glycosyltransferase	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4 Gene: Bcep1808_6056: Glycosyltransferase	Burkholderia xenovorans LB400 Gene: Bxe_A1412: Glycosyltransferase	Glycosyltransferase
Bphy_4566	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_4566: NAD/NADP transhydrogenase alpha subunit	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4 Gene: Bcep1808_6057: NAD/NADP transhydrogenase alpha subunit	Burkholderia xenovorans LB400 Gene: Bxe_A1413: NAD/NADP transhydrogenase alpha subunit	NAD/NADP transhydrogenase alpha subunit
COG2072 (TrkA)	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_4567: FAD dependent oxidoreductase	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4 Gene: Bcep1808_6058: FAD dependent oxidoreductase	Burkholderia xenovorans LB400 Gene: Bxe_A1414: FAD dependent oxidoreductase	FAD dependent oxidoreductase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YrdX - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --