Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PP0486 - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48 6 2
Pseudomonas fluorescens Pf-5 2 2
Pseudomonas mendocina ymp
Pseudomonas putida KT2440 3 2
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG0730
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48

Gene: PSEEN2259: Membrane protein
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
*2
Pseudomonas putida KT2440

Gene: PP3933: Membrane protein

Site:
position = -88
score = 6.27632
sequence = ATTGAATCGACTCAAT

Site:
position = -109
score = 4.72295
sequence = ATTGAGTTGAATTTAT

Gene: PP0487: Membrane protein
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Membrane protein
COG4221
 2
Azotobacter vinelandii AvOP

Gene: Avin_30890: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )

Gene: Avin_16870: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )
 
Pseudomonas aeruginosa PAO1

Gene: PA4907: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )
 
Pseudomonas entomophila L48

Gene: PSEEN4911: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )
 
Pseudomonas fluorescens Pf-5

Gene: PFL_0603: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )
 
Pseudomonas mendocina ymp
 2
Pseudomonas putida KT2440

Gene: PP0488: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )

Gene: PP4862: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )
 
Pseudomonas stutzeri A1501

Gene: PST_4121: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO4914: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )
Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )
 
CRON 2.
PSEEN3858
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
*
Pseudomonas entomophila L48

Site:
position = -290
score = 4.94218
sequence = ATTGATTCGATTGAGT

Site:
position = -247
score = 5.55842
sequence = ATTGATTTGTTTCAAT

Gene: PSEEN3858: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
*
Pseudomonas fluorescens Pf-5

Site:
position = -277
score = 4.67513
sequence = ATTGAGTCGATTGTGT

Site:
position = -234
score = 6.49622
sequence = ATTGAATCGATTCAAT

Gene: PFL_4913: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
 
Pseudomonas mendocina ymp
*
Pseudomonas putida KT2440

Site:
position = -53
score = 4.72295
sequence = ATAAATTCAACTCAAT

Site:
position = -74
score = 6.27632
sequence = ATTGAGTCGATTCAAT

Gene: PP0486: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
 
CRON 3.
benE
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
*
Pseudomonas entomophila L48

Site:
position = -44
score = 4.94218
sequence = ACTCAATCGAATCAAT

Site:
position = -87
score = 5.55842
sequence = ATTGAAACAAATCAAT

Gene: PSEEN3859: Benzoate transport protein
*
Pseudomonas fluorescens Pf-5

Site:
position = -1
score = 6.49622
sequence = ATTGAATCGATTCAAT

Gene: PFL_4914: Benzoate transport protein
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Benzoate transport protein
COG665 (DadA)
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48

Gene: PSEEN3860: Glycine/D-amino acid oxidases (deaminating)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Glycine/D-amino acid oxidases (deaminating)
COG251 (TdcF)
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48

Gene: PSEEN3861: Putative translation initiation inhibitor, yjgF family
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Putative translation initiation inhibitor, yjgF family
thrC
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48

Gene: PSEEN3862: Threonine synthase (EC 4.2.3.1)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Threonine synthase (EC 4.2.3.1)
glyA
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48

Gene: PSEEN3863: Serine hydroxymethyltransferase (EC 2.1.2.1)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Serine hydroxymethyltransferase (EC 2.1.2.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD