Regulog PP0486 - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Metabolite transport |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - GntR/MocR
- By pathway - Metabolite transport
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | ||
| Pseudomonas aeruginosa PAO1 | ||
| Pseudomonas entomophila L48 | 6 | 2 |
| Pseudomonas fluorescens Pf-5 | 2 | 2 |
| Pseudomonas mendocina ymp | ||
| Pseudomonas putida KT2440 | 3 | 2 |
| Pseudomonas stutzeri A1501 | ||
| Pseudomonas syringae pv. tomato str. DC3000 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| COG0730 |
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Gene: PSEEN2259: Membrane protein |
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*2
Pseudomonas putida KT2440 Gene: PP3933: Membrane protein Site: position = -88 score = 6.27632 sequence = ATTGAATCGACTCAAT Site: position = -109 score = 4.72295 sequence = ATTGAGTTGAATTTAT Gene: PP0487: Membrane protein |
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Membrane protein |
| COG4221 |
2
Azotobacter vinelandii AvOP Gene: Avin_30890: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 ) Gene: Avin_16870: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 ) |
Gene: PA4907: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 ) |
Gene: PSEEN4911: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 ) |
Gene: PFL_0603: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 ) |
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2
Pseudomonas putida KT2440 Gene: PP0488: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 ) Gene: PP4862: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 ) |
Gene: PST_4121: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 ) |
Gene: PSPTO4914: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 ) |
Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 ) |
| CRON 2. | |||||||||
| PSEEN3858 |
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*
Pseudomonas entomophila L48 Site: position = -290 score = 4.94218 sequence = ATTGATTCGATTGAGT Site: position = -247 score = 5.55842 sequence = ATTGATTTGTTTCAAT Gene: PSEEN3858: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) |
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Pseudomonas fluorescens Pf-5 Site: position = -277 score = 4.67513 sequence = ATTGAGTCGATTGTGT Site: position = -234 score = 6.49622 sequence = ATTGAATCGATTCAAT Gene: PFL_4913: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) |
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*
Pseudomonas putida KT2440 Site: position = -53 score = 4.72295 sequence = ATAAATTCAACTCAAT Site: position = -74 score = 6.27632 sequence = ATTGAGTCGATTCAAT Gene: PP0486: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) |
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Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) |
| CRON 3. | |||||||||
| benE |
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*
Pseudomonas entomophila L48 Site: position = -44 score = 4.94218 sequence = ACTCAATCGAATCAAT Site: position = -87 score = 5.55842 sequence = ATTGAAACAAATCAAT Gene: PSEEN3859: Benzoate transport protein |
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Pseudomonas fluorescens Pf-5 Site: position = -1 score = 6.49622 sequence = ATTGAATCGATTCAAT Gene: PFL_4914: Benzoate transport protein |
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Benzoate transport protein |
| COG665 (DadA) |
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Gene: PSEEN3860: Glycine/D-amino acid oxidases (deaminating) |
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Glycine/D-amino acid oxidases (deaminating) |
| COG251 (TdcF) |
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Gene: PSEEN3861: Putative translation initiation inhibitor, yjgF family |
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Putative translation initiation inhibitor, yjgF family |
| thrC |
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Gene: PSEEN3862: Threonine synthase (EC 4.2.3.1) |
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Threonine synthase (EC 4.2.3.1) |
| glyA |
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Gene: PSEEN3863: Serine hydroxymethyltransferase (EC 2.1.2.1) |
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Serine hydroxymethyltransferase (EC 2.1.2.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |