Regulog PP0486 - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Metabolite transport
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 11 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By TF family - GntR/MocR
By pathway - Metabolite transport

Statistics of regulated genes
Genome	Genes	Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48	6	2
Pseudomonas fluorescens Pf-5	2	2
Pseudomonas mendocina ymp
Pseudomonas putida KT2440	3	2
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
COG0730	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN2259: Membrane protein	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	2 Pseudomonas putida KT2440* Gene: PP3933: Membrane protein Site: position = -88 score = 6.27632 sequence = ATTGAATCGACTCAAT Site: position = -109 score = 4.72295 sequence = ATTGAGTTGAATTTAT Gene: PP0487: Membrane protein	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Membrane protein
COG4221	2 Azotobacter vinelandii AvOP Gene: Avin_30890: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 ) Gene: Avin_16870: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )	Pseudomonas aeruginosa PAO1 Gene: PA4907: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )	Pseudomonas entomophila L48 Gene: PSEEN4911: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )	Pseudomonas fluorescens Pf-5 Gene: PFL_0603: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )	Pseudomonas mendocina ymp	2 Pseudomonas putida KT2440 Gene: PP0488: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 ) Gene: PP4862: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )	Pseudomonas stutzeri A1501 Gene: PST_4121: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO4914: Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )	Short-chain dehydrogenase/reductase SDR( EC:1.1.1.276 )

CRON 2.
PSEEN3858	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	* Pseudomonas entomophila L48 Site: position = -290 score = 4.94218 sequence = ATTGATTCGATTGAGT Site: position = -247 score = 5.55842 sequence = ATTGATTTGTTTCAAT Gene: PSEEN3858: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)	* Pseudomonas fluorescens Pf-5 Site: position = -277 score = 4.67513 sequence = ATTGAGTCGATTGTGT Site: position = -234 score = 6.49622 sequence = ATTGAATCGATTCAAT Gene: PFL_4913: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)	Pseudomonas mendocina ymp	* Pseudomonas putida KT2440 Site: position = -53 score = 4.72295 sequence = ATAAATTCAACTCAAT Site: position = -74 score = 6.27632 sequence = ATTGAGTCGATTCAAT Gene: PP0486: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)

CRON 3.
benE	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	* Pseudomonas entomophila L48 Site: position = -44 score = 4.94218 sequence = ACTCAATCGAATCAAT Site: position = -87 score = 5.55842 sequence = ATTGAAACAAATCAAT Gene: PSEEN3859: Benzoate transport protein	* Pseudomonas fluorescens Pf-5 Site: position = -1 score = 6.49622 sequence = ATTGAATCGATTCAAT Gene: PFL_4914: Benzoate transport protein	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Benzoate transport protein
COG665 (DadA)	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN3860: Glycine/D-amino acid oxidases (deaminating)	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Glycine/D-amino acid oxidases (deaminating)
COG251 (TdcF)	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN3861: Putative translation initiation inhibitor, yjgF family	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Putative translation initiation inhibitor, yjgF family
thrC	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN3862: Threonine synthase (EC 4.2.3.1)	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Threonine synthase (EC 4.2.3.1)
glyA	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN3863: Serine hydroxymethyltransferase (EC 2.1.2.1)	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Serine hydroxymethyltransferase (EC 2.1.2.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PP0486 - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --