Regulog GulR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:
Biological process:	Glucarate utilization; Galactarate utilization
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 13 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - GulR
By TF family - LysR
By pathway - Glucarate utilization
By pathway - Galactarate utilization

Statistics of regulated genes
Genome	Genes	Operons
Xanthobacter autotrophicus Py2
Azorhizobium caulinodans ORS 571	5	2
Nitrobacter winogradskyi Nb-255
Bradyrhizobium sp. BTAi1	10	5
Bradyrhizobium japonicum USDA 110	9	5
Rhodopseudomonas palustris CGA009
Mesorhizobium sp. BNC1
Bartonella quintana str. Toulouse
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Agrobacterium tumefaciens str. C58 (Cereon)
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234
Sinorhizobium meliloti 1021

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
gudP	Xanthobacter autotrophicus Py2	* Azorhizobium caulinodans ORS 571 Site: position = -304 score = 5.48988 sequence = ATCAATCCAAAAAATGGAATGAT Gene: AZC_2640: D-glucarate permease / D-galactarate permease	Nitrobacter winogradskyi Nb-255	* Bradyrhizobium sp. BTAi1 Site: position = -105 score = 6.18422 sequence = ATCAATCCAATAATTGGATCGAT Gene: BBta_6485: D-glucarate permease / D-galactarate permease	* Bradyrhizobium japonicum USDA 110 Site: position = -107 score = 6.08215 sequence = ATCAATCCAAAAACGGCATCGAT Gene: blr5869: D-glucarate permease / D-galactarate permease	Rhodopseudomonas palustris CGA009	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Agrobacterium tumefaciens str. C58 (Cereon)	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021	D-glucarate permease / D-galactarate permease
gulR	Xanthobacter autotrophicus Py2	Azorhizobium caulinodans ORS 571 Gene: AZC_2639: Predicted glucarate/galactarate utilization regulator, LysR family	Nitrobacter winogradskyi Nb-255	* Bradyrhizobium sp. BTAi1 Site: position = -21 score = 5.08401 sequence = ATCCATGCCGGGGAGGCATCGAT Gene: BBta_6486: Predicted glucarate/galactarate utilization regulator, LysR family	* Bradyrhizobium japonicum USDA 110 Site: position = -21 score = 4.97114 sequence = ATTCATCTAAGGCATGTATCGAT Gene: blr5870: Predicted glucarate/galactarate utilization regulator, LysR family	Rhodopseudomonas palustris CGA009	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Agrobacterium tumefaciens str. C58 (Cereon)	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021	Predicted glucarate/galactarate utilization regulator, LysR family

CRON 2.
kdgD	Xanthobacter autotrophicus Py2 Gene: Xaut_3371: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	* Azorhizobium caulinodans ORS 571 Site: position = -70 score = 5.4118 sequence = ACTGATCCCAAAAACGCATCGAT Gene: AZC_2638: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Nitrobacter winogradskyi Nb-255	* Bradyrhizobium sp. BTAi1 Site: position = -141 score = 5.22867 sequence = ATTGATACCGACCCAGCATCAAT Gene: BBta_6487: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	* Bradyrhizobium japonicum USDA 110 Site: position = -128 score = 5.35737 sequence = ATTGATGCTGATTTCGCATCGGT Gene: blr5871: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Rhodopseudomonas palustris CGA009	Mesorhizobium sp. BNC1 Gene: Meso_1947: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3140: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Rhizobium etli CFN 42 Gene: RHE_CH02057: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2335: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Rhizobium sp. NGR234 Gene: NGR_b07750: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Sinorhizobium meliloti 1021 Gene: SMa1440: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
gudD	Xanthobacter autotrophicus Py2	Azorhizobium caulinodans ORS 571	Nitrobacter winogradskyi Nb-255	Bradyrhizobium sp. BTAi1 Gene: BBta_6488: Glucarate dehydratase (EC 4.2.1.40)	Bradyrhizobium japonicum USDA 110 Gene: blr5872: Glucarate dehydratase (EC 4.2.1.40)	Rhodopseudomonas palustris CGA009	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Agrobacterium tumefaciens str. C58 (Cereon)	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021	Glucarate dehydratase (EC 4.2.1.40)
kgsD	Xanthobacter autotrophicus Py2	Azorhizobium caulinodans ORS 571 Gene: AZC_2637: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)	Nitrobacter winogradskyi Nb-255	Bradyrhizobium sp. BTAi1 Gene: BBta_6489: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)	Bradyrhizobium japonicum USDA 110 Gene: blr5873: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)	Rhodopseudomonas palustris CGA009	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Agrobacterium tumefaciens str. C58 (Cereon)	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021	Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
garD	Xanthobacter autotrophicus Py2	Azorhizobium caulinodans ORS 571 Gene: AZC_2636: D-galactarate dehydratase (EC 4.2.1.42)	Nitrobacter winogradskyi Nb-255	Bradyrhizobium sp. BTAi1 Gene: BBta_6490: D-galactarate dehydratase (EC 4.2.1.42)	Bradyrhizobium japonicum USDA 110 Gene: blr5874: D-galactarate dehydratase (EC 4.2.1.42)	Rhodopseudomonas palustris CGA009	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Agrobacterium tumefaciens str. C58 (Cereon)	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021	D-galactarate dehydratase (EC 4.2.1.42)

CRON 3.
uxuF	Xanthobacter autotrophicus Py2	Azorhizobium caulinodans ORS 571	Nitrobacter winogradskyi Nb-255	* Bradyrhizobium sp. BTAi1 Site: position = -103 score = 5.94043 sequence = ATCAATACCGATCCTGCATCGAT Gene: BBta_6297: Predicted uronate lactonase, PF10282 family	* Bradyrhizobium japonicum USDA 110 Site: position = -42 score = 5.7911 sequence = ACCGATACCATTTCGGCATCGAT Gene: blr0368: Predicted uronate lactonase, PF10282 family	Rhodopseudomonas palustris CGA009	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Agrobacterium tumefaciens str. C58 (Cereon)	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021	Predicted uronate lactonase, PF10282 family

CRON 4.
uxuP	Xanthobacter autotrophicus Py2 Gene: Xaut_3368: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component	Azorhizobium caulinodans ORS 571 Gene: AZC_3338: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component	Nitrobacter winogradskyi Nb-255	* Bradyrhizobium sp. BTAi1 Site: position = -183 score = 6.22088 sequence = ATCGATGCAAGTCTTGCATTGAT Gene: BBta_0128: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component	Bradyrhizobium japonicum USDA 110 Gene: bll6058: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component	Rhodopseudomonas palustris CGA009	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3137: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4358: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021 Gene: SMb21353: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component	Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
uxuQ	Xanthobacter autotrophicus Py2 Gene: Xaut_3367: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component	Azorhizobium caulinodans ORS 571 Gene: AZC_3337: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component	Nitrobacter winogradskyi Nb-255	Bradyrhizobium sp. BTAi1 Gene: BBta_0129: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component	Bradyrhizobium japonicum USDA 110 Gene: bll6057: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component	Rhodopseudomonas palustris CGA009	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3136: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4359: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021 Gene: SMb21352: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component	Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
uxuM	Xanthobacter autotrophicus Py2 Gene: Xaut_3366: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component	Azorhizobium caulinodans ORS 571 Gene: AZC_3336: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component	Nitrobacter winogradskyi Nb-255	Bradyrhizobium sp. BTAi1 Gene: BBta_0130: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component	Bradyrhizobium japonicum USDA 110 Gene: bll6056: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component	Rhodopseudomonas palustris CGA009	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3135: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4360: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021 Gene: SMb21351: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component	Predicted glucuronate /galacturonate TRAP-type transporter, large permease component

CRON 5.
uxuP2	Xanthobacter autotrophicus Py2	Azorhizobium caulinodans ORS 571	Nitrobacter winogradskyi Nb-255	Bradyrhizobium sp. BTAi1	* Bradyrhizobium japonicum USDA 110 Site: position = -130 score = 5.73582 sequence = ATCCATACCTGAATTGGATCGAT Site: position = -151 score = 4.80007 sequence = ATCAATCTGCGTTCGGCATTGAT Gene: bll6551: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component	Rhodopseudomonas palustris CGA009	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Agrobacterium tumefaciens str. C58 (Cereon)	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021	Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
uxuQM2	Xanthobacter autotrophicus Py2	Azorhizobium caulinodans ORS 571	Nitrobacter winogradskyi Nb-255	Bradyrhizobium sp. BTAi1	Bradyrhizobium japonicum USDA 110 Gene: bll6550: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component / large permease component	Rhodopseudomonas palustris CGA009	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Agrobacterium tumefaciens str. C58 (Cereon)	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Sinorhizobium meliloti 1021	Predicted glucuronate /galacturonate TRAP-type transporter, small permease component / large permease component

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GulR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --