Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog MetR - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor (activator)
Biological process: Methionine biosynthesis
Effector: Homocysteine
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 13 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N 2 2
Bordetella bronchiseptica RB50 2 2
Bordetella petrii DSM 12804 3 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metR
*
Bordetella avium 197N

Site:
position = -154
score = 5.22137
sequence = ATGAGTAATAGTCAT

Site:
position = -46
score = 5.18203
sequence = TTGAGAAGTATTCAT

Gene: BAV2307: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Bordetella bronchiseptica RB50

Site:
position = -176
score = 5.22137
sequence = ATGAATAATAGTCAT

Site:
position = -68
score = 5.72303
sequence = TTGAGTATTATTCAT

Gene: BB2078: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Bordetella petrii DSM 12804

Site:
position = -173
score = 5.22137
sequence = ATGAGTAATAGTCAT

Site:
position = -67
score = 4.73028
sequence = TTGAGATTTATTCAT

Gene: Bpet2058: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
 
CRON 2.
metE
*
Bordetella avium 197N

Site:
position = -108
score = 5.18203
sequence = ATGAATACTTCTCAA

Site:
position = 0
score = 5.22137
sequence = ATGACTATTACTCAT

Gene: BAV2306: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Bordetella bronchiseptica RB50

Site:
position = -108
score = 5.72303
sequence = ATGAATAATACTCAA

Site:
position = 0
score = 5.22137
sequence = ATGACTATTATTCAT

Gene: BB2079: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Bordetella petrii DSM 12804

Site:
position = -106
score = 4.73028
sequence = ATGAATAAATCTCAA

Site:
position = 0
score = 5.22137
sequence = ATGACTATTACTCAT

Gene: Bpet2059: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
CRON 3.
glyA
 
Bordetella avium 197N

Gene: BAV2961: Serine hydroxymethyltransferase (EC 2.1.2.1)
 
Bordetella bronchiseptica RB50

Gene: BB4348: Serine hydroxymethyltransferase (EC 2.1.2.1)
*
Bordetella petrii DSM 12804

Site:
position = -190
score = 5.11061
sequence = TTGAATATTCCTCAA

Gene: Bpet0614: Serine hydroxymethyltransferase (EC 2.1.2.1)
Serine hydroxymethyltransferase (EC 2.1.2.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise