Regulog MetR - Alcaligenaceae
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | repressor (activator) |
| Biological process: | Methionine biosynthesis |
| Effector: | Homocysteine |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alcaligenaceae
- By trascription factor - MetR
- By TF family - LysR
- By effector - Homocysteine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Bordetella avium 197N | 2 | 2 |
| Bordetella bronchiseptica RB50 | 2 | 2 |
| Bordetella petrii DSM 12804 | 3 | 3 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| metR |
*
Bordetella avium 197N Site: position = -154 score = 5.22137 sequence = ATGAGTAATAGTCAT Site: position = -46 score = 5.18203 sequence = TTGAGAAGTATTCAT Gene: BAV2307: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Bordetella bronchiseptica RB50 Site: position = -176 score = 5.22137 sequence = ATGAATAATAGTCAT Site: position = -68 score = 5.72303 sequence = TTGAGTATTATTCAT Gene: BB2078: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Bordetella petrii DSM 12804 Site: position = -173 score = 5.22137 sequence = ATGAGTAATAGTCAT Site: position = -67 score = 4.73028 sequence = TTGAGATTTATTCAT Gene: Bpet2058: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
| CRON 2. | ||||
| metE |
*
Bordetella avium 197N Site: position = -108 score = 5.18203 sequence = ATGAATACTTCTCAA Site: position = 0 score = 5.22137 sequence = ATGACTATTACTCAT Gene: BAV2306: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Bordetella bronchiseptica RB50 Site: position = -108 score = 5.72303 sequence = ATGAATAATACTCAA Site: position = 0 score = 5.22137 sequence = ATGACTATTATTCAT Gene: BB2079: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Bordetella petrii DSM 12804 Site: position = -106 score = 4.73028 sequence = ATGAATAAATCTCAA Site: position = 0 score = 5.22137 sequence = ATGACTATTACTCAT Gene: Bpet2059: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| CRON 3. | ||||
| glyA |
Gene: BAV2961: Serine hydroxymethyltransferase (EC 2.1.2.1) |
Gene: BB4348: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Bordetella petrii DSM 12804 Site: position = -190 score = 5.11061 sequence = TTGAATATTCCTCAA Gene: Bpet0614: Serine hydroxymethyltransferase (EC 2.1.2.1) |
Serine hydroxymethyltransferase (EC 2.1.2.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |