Regulog PdxR - Corynebacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | activator |
| Biological process: | Pyridoxine biosynthesis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Actinobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium amycolatum SK46 | ||
| Corynebacterium aurimucosum ATCC 700975 | 2 | 1 |
| Corynebacterium diphtheriae NCTC 13129 | 2 | 1 |
| Corynebacterium efficiens YS-314 | ||
| Corynebacterium glutamicum ATCC 13032 | 2 | 1 |
| Corynebacterium jeikeium K411 | ||
| Corynebacterium kroppenstedtii DSM 44385 | ||
| Corynebacterium urealyticum DSM 7109 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| pdxS |
Gene: CORAM0001_2117: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -71 score = 13.888 sequence = TAAGTGGTCT-(14)-AAAATGGCTC-(7)-GGACCAATTT Gene: cauri_0520: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -71 score = 14.2749 sequence = AAAGTGGTCT-(14)-AATTTGGATC-(7)-AGTCCACTTT Gene: DIP0227: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
|
*
Corynebacterium glutamicum ATCC 13032 Site: position = -71 score = 14.3774 sequence = AAAGTGGTCT-(14)-AAAGTGGATC-(7)-AGTCCACTTT Gene: cg0898: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: jk1060: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: ckrop_1034: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
|
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
| pdxT |
Gene: CORAM0001_2119: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: cauri_0521: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: DIP0228: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
|
Gene: cg0899: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: jk1058: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: ckrop_1033: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
|
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |