Regulog PdxR - Corynebacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:	activator
Biological process:	Pyridoxine biosynthesis
Effector:	Pyridoxal-5-phosphate
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Corynebacteriaceae
By trascription factor - PdxR
By TF family - GntR/MocR
By effector - Pyridoxal-5-phosphate
By pathway - Pyridoxine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975	2	1
Corynebacterium diphtheriae NCTC 13129	2	1
Corynebacterium efficiens YS-314
Corynebacterium glutamicum ATCC 13032	2	1
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
pdxS	Corynebacterium amycolatum SK46 Gene: CORAM0001_2117: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	* Corynebacterium aurimucosum ATCC 700975 Site: position = -71 score = 13.888 sequence = TAAGTGGTCT-(14)-AAAATGGCTC-(7)-GGACCAATTT Gene: cauri_0520: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	* Corynebacterium diphtheriae NCTC 13129 Site: position = -71 score = 14.2749 sequence = AAAGTGGTCT-(14)-AATTTGGATC-(7)-AGTCCACTTT Gene: DIP0227: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Corynebacterium efficiens YS-314	* Corynebacterium glutamicum ATCC 13032 Site: position = -71 score = 14.3774 sequence = AAAGTGGTCT-(14)-AAAGTGGATC-(7)-AGTCCACTTT Gene: cg0898: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Corynebacterium jeikeium K411 Gene: jk1060: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_1034: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Corynebacterium urealyticum DSM 7109	Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
pdxT	Corynebacterium amycolatum SK46 Gene: CORAM0001_2119: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_0521: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP0228: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg0899: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Corynebacterium jeikeium K411 Gene: jk1058: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_1033: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Corynebacterium urealyticum DSM 7109	Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxR - Corynebacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --