Regulog UxuR3 - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glucuronate utilization
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 9 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others
By pathway - Glucuronate utilization

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666	9	2
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110	9	1
Verminephrobacter eiseniae EF01-2	8	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
uxuR3	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	* Polaromonas sp. JS666 Site: position = -240 score = 5.09543 sequence = ATAGTGGTAAACCACTAA Site: position = -217 score = 5.89064 sequence = AAATTGGTATACCACTTA Site: position = -61 score = 5.07318 sequence = TAATTGGTAAACCATCTT Gene: Bpro_3977: Predicted transcriptional regulator for glucuronate utilization, GntR family	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -46 score = 4.766 sequence = TAATTGGTATGCCACGCA Site: position = -69 score = 5.0475 sequence = CTAGTGGTAAACCACTAT Gene: Vapar_2876: Predicted transcriptional regulator for glucuronate utilization, GntR family	* Verminephrobacter eiseniae EF01-2 Site: position = -66 score = 5.0475 sequence = CTAGTGGTAAACCACTAT Gene: Veis_3567: Predicted transcriptional regulator for glucuronate utilization, GntR family	Predicted transcriptional regulator for glucuronate utilization, GntR family
Aave_2470	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2877: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor	Verminephrobacter eiseniae EF01-2	Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor
COG0834	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	* Polaromonas sp. JS666 Site: position = -118 score = 5.09543 sequence = TTAGTGGTTTACCACTAT Site: position = -297 score = 5.07318 sequence = AAGATGGTTTACCAATTA Site: position = -141 score = 5.89064 sequence = TAAGTGGTATACCAATTT Gene: Bpro_3976: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2878: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain	Verminephrobacter eiseniae EF01-2 Gene: Veis_3566: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain	ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
COG1063	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2879: Zn-dependent dehydrogenase	Verminephrobacter eiseniae EF01-2 Gene: Veis_3565: Zn-dependent dehydrogenase	Zn-dependent dehydrogenase
COG0765	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3975: ABC-type amino acid transport system, permease component	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2880: ABC-type amino acid transport system, permease component	Verminephrobacter eiseniae EF01-2 Gene: Veis_3564: ABC-type amino acid transport system, permease component	ABC-type amino acid transport system, permease component
COG0765-2	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3974: ABC-type amino acid transport system, permease component	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2881: ABC-type amino acid transport system, permease component	Verminephrobacter eiseniae EF01-2 Gene: Veis_3563: ABC-type amino acid transport system, permease component	ABC-type amino acid transport system, permease component
COG1126	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3973: ABC-type polar amino acid transport system, ATPase component	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2882: ABC-type polar amino acid transport system, ATPase component	Verminephrobacter eiseniae EF01-2 Gene: Veis_3562: ABC-type polar amino acid transport system, ATPase component	ABC-type polar amino acid transport system, ATPase component
Bpro_3978	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3978: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2883: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_3561: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein	Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
uxuA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3970: D-mannonate oxidoreductase (EC 1.1.1.57)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2884: D-mannonate oxidoreductase (EC 1.1.1.57)	Verminephrobacter eiseniae EF01-2 Gene: Veis_3560: D-mannonate oxidoreductase (EC 1.1.1.57)	D-mannonate oxidoreductase (EC 1.1.1.57)
COG2055	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3972: Malate dehydrogenase (EC 1.1.1.37)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Malate dehydrogenase (EC 1.1.1.37)
COG2706	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3971: 3-carboxymuconate cyclase	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	3-carboxymuconate cyclase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog UxuR3 - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --