Regulog UxuR3 - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucuronate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/Others
- By pathway - Glucuronate utilization
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | ||
| Delftia acidovorans SPH-1 | ||
| Leptothrix cholodnii SP-6 | ||
| Methylibium petroleiphilum PM1 | ||
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | 9 | 2 |
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | 9 | 1 |
| Verminephrobacter eiseniae EF01-2 | 8 | 1 |
| Genes | Function | |||||||||||
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| CRON 1. | ||||||||||||
| uxuR3 |
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Polaromonas sp. JS666 Site: position = -240 score = 5.09543 sequence = ATAGTGGTAAACCACTAA Site: position = -217 score = 5.89064 sequence = AAATTGGTATACCACTTA Site: position = -61 score = 5.07318 sequence = TAATTGGTAAACCATCTT Gene: Bpro_3977: Predicted transcriptional regulator for glucuronate utilization, GntR family |
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Variovorax paradoxus S110 Site: position = -46 score = 4.766 sequence = TAATTGGTATGCCACGCA Site: position = -69 score = 5.0475 sequence = CTAGTGGTAAACCACTAT Gene: Vapar_2876: Predicted transcriptional regulator for glucuronate utilization, GntR family |
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Verminephrobacter eiseniae EF01-2 Site: position = -66 score = 5.0475 sequence = CTAGTGGTAAACCACTAT Gene: Veis_3567: Predicted transcriptional regulator for glucuronate utilization, GntR family |
Predicted transcriptional regulator for glucuronate utilization, GntR family |
| Aave_2470 |
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Gene: Vapar_2877: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor |
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Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor |
| COG0834 |
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Polaromonas sp. JS666 Site: position = -118 score = 5.09543 sequence = TTAGTGGTTTACCACTAT Site: position = -297 score = 5.07318 sequence = AAGATGGTTTACCAATTA Site: position = -141 score = 5.89064 sequence = TAAGTGGTATACCAATTT Gene: Bpro_3976: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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Gene: Vapar_2878: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
Gene: Veis_3566: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
| COG1063 |
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Gene: Vapar_2879: Zn-dependent dehydrogenase |
Gene: Veis_3565: Zn-dependent dehydrogenase |
Zn-dependent dehydrogenase |
| COG0765 |
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Gene: Bpro_3975: ABC-type amino acid transport system, permease component |
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Gene: Vapar_2880: ABC-type amino acid transport system, permease component |
Gene: Veis_3564: ABC-type amino acid transport system, permease component |
ABC-type amino acid transport system, permease component |
| COG0765-2 |
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Gene: Bpro_3974: ABC-type amino acid transport system, permease component |
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Gene: Vapar_2881: ABC-type amino acid transport system, permease component |
Gene: Veis_3563: ABC-type amino acid transport system, permease component |
ABC-type amino acid transport system, permease component |
| COG1126 |
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Gene: Bpro_3973: ABC-type polar amino acid transport system, ATPase component |
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Gene: Vapar_2882: ABC-type polar amino acid transport system, ATPase component |
Gene: Veis_3562: ABC-type polar amino acid transport system, ATPase component |
ABC-type polar amino acid transport system, ATPase component |
| Bpro_3978 |
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Gene: Bpro_3978: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein |
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Gene: Vapar_2883: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein |
Gene: Veis_3561: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein |
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein |
| uxuA |
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Gene: Bpro_3970: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: Vapar_2884: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: Veis_3560: D-mannonate oxidoreductase (EC 1.1.1.57) |
D-mannonate oxidoreductase (EC 1.1.1.57) |
| COG2055 |
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Gene: Bpro_3972: Malate dehydrogenase (EC 1.1.1.37) |
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Malate dehydrogenase (EC 1.1.1.37) |
| COG2706 |
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Gene: Bpro_3971: 3-carboxymuconate cyclase |
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3-carboxymuconate cyclase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |