Regulog PdxR2 - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine/pyridoxal homeostasis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Citrobacter koseri ATCC BAA-895 | 4 | 2 |
| Edwardsiella tarda EIB202 | ||
| Enterobacter sp. 638 | 4 | 2 |
| Erwinia amylovora ATCC 49946 | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ||
| Escherichia coli str. K-12 substr. MG1655 | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 3 | 2 |
| Photorhabdus luminescens subsp. laumondii TTO1 | ||
| Proteus mirabilis HI4320 | ||
| Salmonella typhimurium LT2 | 4 | 2 |
| Serratia proteamaculans 568 | 4 | 2 |
| Yersinia pestis KIM |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| pdxZ |
Gene: CKO_00373: Short hypothetical protein in pyridoxine metabolism |
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Gene: KPN_02765: Short hypothetical protein in pyridoxine metabolism |
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Gene: STM2434: Short hypothetical protein in pyridoxine metabolism |
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Serratia proteamaculans 568 Site: position = -56 score = 3.98983 sequence = TTTGTATTAGTTCAAA Gene: Spro_2564: Short hypothetical protein in pyridoxine metabolism |
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Short hypothetical protein in pyridoxine metabolism |
| COG0518 |
Gene: CKO_00370: Putative glutamine amidotransferase-like protein |
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Gene: Ent638_4214: Putative glutamine amidotransferase-like protein |
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Gene: KPN_01781: Putative glutamine amidotransferase-like protein |
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Gene: STM2437: Putative glutamine amidotransferase-like protein |
Gene: Spro_2565: Putative glutamine amidotransferase-like protein |
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Putative glutamine amidotransferase-like protein |
| pdxK |
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Citrobacter koseri ATCC BAA-895 Site: position = -81 score = 5.57304 sequence = ATTGACCTATGACAAA Site: position = -59 score = 4.91317 sequence = TTTAGCATATGACGAT Gene: CKO_00372: Pyridoxal kinase (EC 2.7.1.35) |
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Enterobacter sp. 638 Gene: Ent638_2946: Pyridoxal kinase (EC 2.7.1.35) Gene: Ent638_4211: Pyridoxal kinase (EC 2.7.1.35) |
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Gene: b2418: Pyridoxal kinase (EC 2.7.1.35) |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -81 score = 5.57304 sequence = ATTGACCTATGACAAA Site: position = -59 score = 5.05534 sequence = TTTAGCATAGGACGAA Gene: KPN_02766: Pyridoxal kinase (EC 2.7.1.35) |
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Salmonella typhimurium LT2 Site: position = -81 score = 5.57304 sequence = ATTGACCTATGACAAA Site: position = -59 score = 5.32013 sequence = TTTAGCATATGACAAT Gene: STM2435: Pyridoxal kinase (EC 2.7.1.35) |
Gene: Spro_2566: Pyridoxal kinase (EC 2.7.1.35) |
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Pyridoxal kinase (EC 2.7.1.35) |
| pdxR2 |
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Citrobacter koseri ATCC BAA-895 Site: position = -39 score = 4.91317 sequence = ATCGTCATATGCTAAA Site: position = -17 score = 5.57304 sequence = TTTGTCATAGGTCAAT Gene: CKO_00371: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
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Enterobacter sp. 638 Site: position = -36 score = 5.28271 sequence = ATTGTCCTAGGCTAAA Site: position = -14 score = 4.08223 sequence = TTTGAACCAGGTCAAT Gene: Ent638_4213: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -39 score = 5.05534 sequence = TTCGTCCTATGCTAAA Site: position = -17 score = 5.57304 sequence = TTTGTCATAGGTCAAT Gene: KPN_02767: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
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Salmonella typhimurium LT2 Site: position = -39 score = 5.32013 sequence = ATTGTCATATGCTAAA Site: position = -17 score = 5.57304 sequence = TTTGTCATAGGTCAAT Gene: STM2436: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
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Serratia proteamaculans 568 Site: position = -28 score = 3.98983 sequence = TTTGAACTAATACAAA Gene: Spro_2563: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
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Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
| COG0325 |
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Enterobacter sp. 638 Site: position = -71 score = 4.08223 sequence = ATTGACCTGGTTCAAA Site: position = -49 score = 5.28271 sequence = TTTAGCCTAGGACAAT Gene: Ent638_4212: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type |
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Gene: ECA4047: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type |
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Predicted pyridoxal phosphate-dependent enzyme, YBL036C type |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |