Regulog ScrR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Sucrose utilization |
| Effector: | Sucrose |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - LacI
- By effector - Sucrose
- By pathway - Sucrose utilization
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | ||
| Shewanella putrefaciens CN-32 | ||
| Shewanella sp W3-18-1 | ||
| Shewanella sp ANA-3 | 4 | 3 |
| Shewanella sp MR-4 | 4 | 3 |
| Shewanella sp MR-7 | 4 | 3 |
| Shewanella baltica OS155 | 4 | 3 |
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | 5 | 4 |
| Shewanella amazonensis SB2B | ||
| Shewanella loihica PV-4 | ||
| Shewanella pealeana ATCC 700345 | ||
| Shewanella halifaxensis HAW-EB4 | ||
| Shewanella piezotolerans WP3 | ||
| Shewanella sediminis HAW-EB3 | ||
| Shewanella woodyi ATCC 51908 |
| Genes | Function | ||||||||||||||||
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| CRON 1. | |||||||||||||||||
| omp(Scr) |
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Shewanella sp ANA-3 Site: position = -125 score = 6.85652 sequence = AACTTAATCGATTAAGAT Gene: Shewana3_0068: Predicted sucrose-specific TonB-dependent receptor |
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Shewanella sp MR-4 Site: position = -124 score = 6.85652 sequence = AACTTAATCGATTAAGAT Gene: Shewmr4_0066: Predicted sucrose-specific TonB-dependent receptor |
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Shewanella sp MR-7 Site: position = -124 score = 6.85652 sequence = AACTTAATCGATTAAGAT Gene: Shewmr7_0064: Predicted sucrose-specific TonB-dependent receptor |
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Shewanella baltica OS155 Site: position = -143 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Sbal_4286: Predicted sucrose-specific TonB-dependent receptor |
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Shewanella frigidimarina NCIMB 400 Site: position = -147 score = 6.76292 sequence = AACTTAATCGATTAAGTC Gene: Sfri_3988: Predicted sucrose-specific TonB-dependent receptor |
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Predicted sucrose-specific TonB-dependent receptor |
| scrK |
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Gene: Shewana3_0069: Fructokinase (EC 2.7.1.4) |
Gene: Shewmr4_0067: Fructokinase (EC 2.7.1.4) |
Gene: Shewmr7_0065: Fructokinase (EC 2.7.1.4) |
Gene: Sbal_4285: Fructokinase (EC 2.7.1.4) |
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Gene: Sfri_3987: Fructokinase (EC 2.7.1.4) |
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Fructokinase (EC 2.7.1.4) |
| CRON 2. | |||||||||||||||||
| scrT |
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Shewanella sp ANA-3 Site: position = -186 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Shewana3_0067: Predicted sucrose permease, MFS family, FucP subfamily |
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Shewanella sp MR-4 Site: position = -186 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Shewmr4_0065: Predicted sucrose permease, MFS family, FucP subfamily |
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Shewanella sp MR-7 Site: position = -186 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Shewmr7_0063: Predicted sucrose permease, MFS family, FucP subfamily |
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Shewanella baltica OS155 Site: position = -190 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Sbal_4287: Predicted sucrose permease, MFS family, FucP subfamily |
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Shewanella frigidimarina NCIMB 400 Site: position = -156 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Sfri_3989: Predicted sucrose permease, MFS family, FucP subfamily |
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Predicted sucrose permease, MFS family, FucP subfamily |
| CRON 3. | |||||||||||||||||
| scrP |
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Shewanella sp ANA-3 Site: position = -88 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Shewana3_0066: Sucrose phosphorylase (EC 2.4.1.7) |
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Shewanella sp MR-4 Site: position = -88 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Shewmr4_0064: Sucrose phosphorylase (EC 2.4.1.7) |
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Shewanella sp MR-7 Site: position = -88 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Shewmr7_0062: Sucrose phosphorylase (EC 2.4.1.7) |
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Shewanella baltica OS155 Site: position = -88 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Sbal_4288: Sucrose phosphorylase (EC 2.4.1.7) |
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Shewanella frigidimarina NCIMB 400 Site: position = -50 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Sfri_3990: Sucrose phosphorylase (EC 2.4.1.7) |
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Sucrose phosphorylase (EC 2.4.1.7) |
| CRON 4. | |||||||||||||||||
| omp(Scr)2 |
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Shewanella frigidimarina NCIMB 400 Site: position = -90 score = 6.58601 sequence = AACTTAATCGAATAAGTT Gene: Sfri_4008: predicted sucrose-specific TonB-dependent receptor |
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predicted sucrose-specific TonB-dependent receptor |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |