Regulog ScrR - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Sucrose utilization
Effector:	Sucrose
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 16 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - LacI
By effector - Sucrose
By pathway - Sucrose utilization

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1
Shewanella putrefaciens CN-32
Shewanella sp W3-18-1
Shewanella sp ANA-3	4	3
Shewanella sp MR-4	4	3
Shewanella sp MR-7	4	3
Shewanella baltica OS155	4	3
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400	5	4
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
omp(Scr)	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -125 score = 6.85652 sequence = AACTTAATCGATTAAGAT Gene: Shewana3_0068: Predicted sucrose-specific TonB-dependent receptor	* Shewanella sp MR-4 Site: position = -124 score = 6.85652 sequence = AACTTAATCGATTAAGAT Gene: Shewmr4_0066: Predicted sucrose-specific TonB-dependent receptor	* Shewanella sp MR-7 Site: position = -124 score = 6.85652 sequence = AACTTAATCGATTAAGAT Gene: Shewmr7_0064: Predicted sucrose-specific TonB-dependent receptor	* Shewanella baltica OS155 Site: position = -143 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Sbal_4286: Predicted sucrose-specific TonB-dependent receptor	Shewanella denitrificans OS217	* Shewanella frigidimarina NCIMB 400 Site: position = -147 score = 6.76292 sequence = AACTTAATCGATTAAGTC Gene: Sfri_3988: Predicted sucrose-specific TonB-dependent receptor	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Predicted sucrose-specific TonB-dependent receptor
scrK	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_0069: Fructokinase (EC 2.7.1.4)	Shewanella sp MR-4 Gene: Shewmr4_0067: Fructokinase (EC 2.7.1.4)	Shewanella sp MR-7 Gene: Shewmr7_0065: Fructokinase (EC 2.7.1.4)	Shewanella baltica OS155 Gene: Sbal_4285: Fructokinase (EC 2.7.1.4)	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400 Gene: Sfri_3987: Fructokinase (EC 2.7.1.4)	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Fructokinase (EC 2.7.1.4)

CRON 2.
scrT	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -186 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Shewana3_0067: Predicted sucrose permease, MFS family, FucP subfamily	* Shewanella sp MR-4 Site: position = -186 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Shewmr4_0065: Predicted sucrose permease, MFS family, FucP subfamily	* Shewanella sp MR-7 Site: position = -186 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Shewmr7_0063: Predicted sucrose permease, MFS family, FucP subfamily	* Shewanella baltica OS155 Site: position = -190 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Sbal_4287: Predicted sucrose permease, MFS family, FucP subfamily	Shewanella denitrificans OS217	* Shewanella frigidimarina NCIMB 400 Site: position = -156 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Sfri_3989: Predicted sucrose permease, MFS family, FucP subfamily	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Predicted sucrose permease, MFS family, FucP subfamily

CRON 3.
scrP	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -88 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Shewana3_0066: Sucrose phosphorylase (EC 2.4.1.7)	* Shewanella sp MR-4 Site: position = -88 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Shewmr4_0064: Sucrose phosphorylase (EC 2.4.1.7)	* Shewanella sp MR-7 Site: position = -88 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Shewmr7_0062: Sucrose phosphorylase (EC 2.4.1.7)	* Shewanella baltica OS155 Site: position = -88 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Sbal_4288: Sucrose phosphorylase (EC 2.4.1.7)	Shewanella denitrificans OS217	* Shewanella frigidimarina NCIMB 400 Site: position = -50 score = 7.14921 sequence = AACTTAATCGATTAAGTT Gene: Sfri_3990: Sucrose phosphorylase (EC 2.4.1.7)	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Sucrose phosphorylase (EC 2.4.1.7)

CRON 4.
omp(Scr)2	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	* Shewanella frigidimarina NCIMB 400 Site: position = -90 score = 6.58601 sequence = AACTTAATCGAATAAGTT Gene: Sfri_4008: predicted sucrose-specific TonB-dependent receptor	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	predicted sucrose-specific TonB-dependent receptor

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog ScrR - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --