Regulog PdxR2 - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine/pyridoxal homeostasis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Nocardiaceae
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Nocardia farcinica IFM 10152 | 1 | 1 |
| Rhodococcus erythropolis PR4 | 1 | 1 |
| Rhodococcus opacus B4 | 1 | 1 |
| Rhodococcus sp. RHA1 | 1 | 1 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| pdxO |
*
Nocardia farcinica IFM 10152 Site: position = -67 score = 13.3212 sequence = ATTGGCCTGT-(14)-ATTGGCCCTT-(3)-TCATGCCACT Gene: nfa50150: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Rhodococcus erythropolis PR4 Site: position = -68 score = 12.8996 sequence = AGTGGCCTAT-(14)-ATTGGACCAT-(4)-TGAAGCCACT Gene: RER_58490: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Rhodococcus opacus B4 Site: position = -24 score = 11.1413 sequence = ACTGGTCTGC-(13)-TGTGGATCTG-(4)-CCGAACCACA Gene: ROP_09560: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Rhodococcus sp. RHA1 Site: position = -66 score = 10.7247 sequence = ACTGGTCTGT-(13)-TGTGGATCTG-(4)-ATGATCCACA Gene: RHA1_ro01234: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |